Support NASA HIWAT and European COSMO weather prediction models#33

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xhqiao89 wants to merge 699 commits intoerdc:masterfrom

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Commits on Oct 3, 2016

commented out running osx job
snowman2
committed
moved language back to python
snowman2
committed

Commits on Oct 4, 2016

minor doc change
snowman2
committed
remove unnecessary element
snowman2
committed
updated docstrings for merge CF compliant code
snowman2
committed
added postprocessing docs
snowman2
committed
updated autofunction methods
snowman2
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added manual tests for inflow grids
snowman2
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Spelling fix
lahatte
authored
Spelling fix.
lahatte
committed
Merge pull request #5 from lahatte/master
Alan D. Snow
authored

Commits on Oct 5, 2016

made tests use unit tests to remove code duplication
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed
added test for 24 hr erai3 file
snowman2
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Added test for t511 3hr manual
snowman2
committed

Commits on Oct 6, 2016

bug fix writing ihg file. Not supposed to write seconds
snowman2
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added TautDEM tests & bug fixes
snowman2
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Added TauDEM installation
snowman2
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Moved conda env activate to right before testing
Alan D. Snow
authored

Commits on Oct 7, 2016

modified code to be python3 compatible
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed
updated wrf-hydro code with fixes and added tests
snowman2
committed
added gis files used to generate wrf input
snowman2
committed
added tests for return periods and seasonal averages
snowman2
committed
various fixes for weight & voronoi
snowman2
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modified url to data
snowman2
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Removed coverage badge because it was not updating.
Alan D. Snow
authored

Commits on Oct 11, 2016

fixed doc bug
snowman2
committed
incremented version
snowman2
committed
Added FLDAS
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed
updated doc string
snowman2
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modified rapid Qout to add sQout for uncertainty in new RAPID version
snowman2
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added muskingum kfac tests
snowman2
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Commits on Oct 12, 2016

changed xrange to past builtins
snowman2
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modified csv reading to use numpy.loadtxt
snowman2
committed

Commits on Oct 14, 2016

modified to integer for py3 and reverted USGS function read back due to issues with numpy reader
snowman2
committed

Commits on Oct 18, 2016

modified IHG to read in gssha rapid connect file and added tests
snowman2
committed
added test for X from drainage line
snowman2
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modified tests to use nose-cov
snowman2
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updated compare path
snowman2
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modified check for sub partition list
snowman2
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Commits on Oct 19, 2016

fix ldas weight example
snowman2
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Commits on Nov 3, 2016

fixed documentation bugs
snowman2
committed
removed random comment
snowman2
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Commits on Nov 8, 2016

modified RAPIDDataset for time zone output & to use pandas
snowman2
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added pandas to installation
snowman2
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removed duplicate code
snowman2
committed

Commits on Nov 14, 2016

Update for testing with OSX
Alan D. Snow
authored
Update build for MAC
Alan D. Snow
authored
Update .travis.yml
Alan D. Snow
authored

Commits on Nov 15, 2016

modified to use env vars from RAPID repo
snowman2
committed
initial commit for appveyor.yml
snowman2
committed
updated miniconda install cmd
snowman2
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updated cd to correct location for source env var script
snowman2
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spacing and rapid installation tweak
snowman2
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updasted CYG vars
snowman2
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updated conda python env var
snowman2
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updated rapid_specify_varpath.sh to point to INSTALLZ_DIR
snowman2
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modified for updated miniconda install
snowman2
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backslash updated
snowman2
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updated conda packages installation
snowman2
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modify install path to cygpath
snowman2
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Commits on Nov 16, 2016

Added batch mode to rapid prereqs install
Alan D. Snow
authored
Added gdal & openmpi to cyqwin installation
Alan D. Snow
authored
updated script to not delete namelist
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
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modified default IS_max_up to 0
snowman2
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added example for reservoir forcing flows
snowman2
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Commits on Nov 18, 2016

updated time range selection with timezone
snowman2
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updated tests to match bug fixes withe namelist and timezone
snowman2
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Commits on Nov 21, 2016

comment out dependencies as their build fails
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed
update install to use cygwin64
snowman2
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fixed name of gfortran package
snowman2
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modified path names to cygpath
snowman2
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Commits on Nov 22, 2016

fixed example strings
snowman2
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updated installation requirements
snowman2
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added check to see if intersection found for rapid rivid
snowman2
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updated installation to include rapid_specify_varpath.sh
snowman2
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added test for no intersect case of weight table generation
snowman2
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Commits on Nov 25, 2016

modified order of import so shapely is before gdal
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed
modified to checout master branch of TauDEM
snowman2
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remove semicolon
snowman2
committed

Commits on Dec 5, 2016

bug fix with tests for reading in file with only one rivid
snowman2
committed
made file reading more rubust
snowman2
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modified to use numpy functions
snowman2
committed

Commits on Dec 19, 2016

modified code to more closely follow pep8
Alan D. Snow
committed

Commits on Dec 21, 2016

added option to convert slope in percentage
snowman2
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added ndmin=2 when reading connectivity file for case with only 1 row
snowman2
committed
bug fix find_goodess_of_fit_csv; pep8 improvements
snowman2
committed
made read csv more robust
snowman2
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modified seasonal average code to include max/min
snowman2
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made divisiors doubles
snowman2
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added new file to removal
snowman2
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Commits on Jan 10, 2017

bug fix printing goodness of fit to file
snowman2
committed
bug fix printing goodness of fit to file
snowman2
committed
bug fix printing goodness of fit to file
snowman2
committed

Commits on Jan 13, 2017

modified to use anaconda's gcc to compile TauDEM to update GDAL version
snowman2
committed
Update .travis.yml
Alan D. Snow
authored

Commits on Jan 24, 2017

fix for docs build
Alan D. Snow
committed

Commits on Jan 27, 2017

.travis.yml
Alan D. Snow
committed
Added cmake to conda install
Alan D. Snow
committed
updated test weight file to new gis output
Alan D. Snow
committed
updated path to TauDEM exe files
Alan D. Snow
committed
removed dowload url
Alan D. Snow
committed
modified to include readme and license using MANIFEST
Alan D. Snow
committed
made netcdf4 package lowercase
Alan D. Snow
committed
incremented version
Alan D. Snow
committed

Commits on Jan 31, 2017

updated installation instructions
Alan D. Snow
committed
made netcdf4 lowercase
Alan D. Snow
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updated installation on RAPIDpy to use RAPID repo prereq script
Alan D. Snow
committed

Commits on Mar 6, 2017

handel invalid polygons when computing the weight table
sdc50
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Merge pull request #10 from sdc50/bugfix/handel-invalid-polygons
Alan D. Snow
authored
updated biuld to use conda-forge forall packages
Alan D. Snow
committed

Commits on Mar 7, 2017

added tests
sdc50
committed
shapefile needed for new tests
sdc50
committed
Merge pull request #11 from sdc50/bugfix/handel-invalid-polygons
Alan D. Snow
authored

Commits on Mar 8, 2017

use pytest as nose is deprecated; move docs requirements to setup.py
Alan D. Snow
committed
updated description to point to RTD
Alan D. Snow
committed
fix
Alan D. Snow
committed
updated version in docs
Alan D. Snow
committed

Commits on Mar 9, 2017

Commits on Mar 10, 2017

Update setup.py
Alan D. Snow
authored

Commits on Mar 21, 2017

Updated generate_return_periods.py
spence97
committed

Commits on Mar 22, 2017

Gumble and Log-Pearson methods added
spence97
committed

Commits on Mar 23, 2017

Commits on Mar 24, 2017

fixed typo on generate_return_periods
spence97
committed

Commits on Mar 31, 2017

added tests
Spencer McDonald
committed
added tests
Spencer McDonald
committed

Commits on Apr 19, 2017

Merge pull request #13 from spence97/return_periods
Alan D. Snow
authored
Merge pull request #12 from aat669/docs
Alan D. Snow
authored

Commits on May 15, 2017

added flexibility to runoff vars; added cmip5; modified end date for file
Jim W. Lewis
committed

Commits on Jun 1, 2017

Added test for CMIP5 data
Jim W. Lewis
committed
Added documentation and example for CMIP5 data
Jim W. Lewis
committed

Commits on Jun 2, 2017

Merge pull request #15 from jimwlewis/cmip
Alan D. Snow
authored

Commits on Jun 13, 2017

added .idea to ignore
snowman2
committed
added option to run different return periods
snowman2
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added .idea for pycharm
snowman2
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removed .idea files
snowman2
committed
merge changes
snowman2
committed
pep-8 comment fixes
snowman2
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made convert 1 to 3 False by default
snowman2
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Merge pull request #17 from snowman2/master
Alan D. Snow
authored
initial steps towards individual model lsm run
snowman2
committed

Commits on Jun 14, 2017

fixes for tests
snowman2
committed
indentation fixes
snowman2
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modified to not have default expected timestep
snowman2
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refactored to allow single folder input/output; removed requirement for dash in folder name
snowman2
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remove pangaea as unused in dependencies
snowman2
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added docstring example for single run
snowman2
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Commits on Jun 15, 2017

Merge pull request #18 from snowman2/lsm_one_input
Alan D. Snow
authored
use pangaea to determine dates where possible; allow qinit
snowman2
committed
removed taudem install
snowman2
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added test skip if RAPID or TauDEM are not installed
snowman2
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added skips if TauDEM or RAPID are not installed
snowman2
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pinned RAPID version until Qinit NetCDF issue fixed
snowman2
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added tests for output_file_info
snowman2
committed

Commits on Jun 16, 2017

Merge pull request #19 from snowman2/lsm_one_input
Alan D. Snow
authored

Commits on Jun 30, 2017

added method to select time for qinit
Alan D. Snow
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only use xarray for gen qinit instead of RAPIDDataset
Alan D. Snow
committed
Merge pull request #22 from snowman2/csv_init
Alan D. Snow
authored
removed requirement for rapid executable location to be valid as it is checked when running
snowman2
committed
fix for issue #14
snowman2
committed
Merge pull request #24 from snowman2/bugfix/issue14
Alan D. Snow
authored
added cygwin to appveyor build
snowman2
committed

Commits on Jul 1, 2017

Update appveyor.yml
Alan D. Snow
authored
Update appveyor.yml
Alan D. Snow
authored

Commits on Jul 6, 2017

added skip for test to run RAPID if RAPID not installed
snowman2
committed
fix compare dataset name
snowman2
committed
Merge pull request #25 from snowman2/fixtest
Alan D. Snow
authored
remove TauDEM build if OSX as it fails
snowman2
committed
removed comment
snowman2
committed
moved version number to 2.5.0
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed
Added anaconda badge.
Alan D. Snow
authored
Added appveyor badge
Alan D. Snow
authored

Commits on Jul 7, 2017

Merge pull request #27 from snowman2/osx_no_taudem
Alan D. Snow
authored
added python 3.6
snowman2
committed

Commits on Jul 10, 2017

Added pangaea to requires.
Alan D. Snow
authored

Commits on Jul 13, 2017

update docstring spacing
snowman2
committed
Merge branch 'master' of https://github.com/erdc-cm/RAPIDpy
snowman2
committed

Commits on Aug 29, 2017

added support for forcing data number calculations
Alan Snow
committed

Commits on Aug 30, 2017

version to 2.5.1
Alan Snow
committed

Commits on Sep 13, 2017

updated repo path for travis CI
Alan Snow
committed
fixed check for masked values. see: https://travis-ci.org/erdc/RAPIDpy/jobs/274313187
Alan Snow
committed
to version 2.5.2
Alan Snow
committed

Commits on Sep 18, 2017

update rapid.py to pass flake8
Alan D. Snow
committed
added back the cygwin install
Alan D. Snow
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added pylint and flake8 tests; updated utilities
Alan D. Snow
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fix appveryor yml line 31 for cygwin install
Alan D. Snow
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updated to pass flake8 and pylint
Alan D. Snow
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update script to install via pip to include test requirements
Alan D. Snow
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added tear down to cleanup previous tests in case of failure
Alan D. Snow
committed

Commits on Sep 19, 2017

fixed example docstrings
Alan D. Snow
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updated docstrings to use numpy; allow return qout as dataframe; made filter_mode the standard
Alan D. Snow
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added line at end of file
Alan D. Snow
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pylint fixes and add to test
Alan D. Snow
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updated docstring to match input parameters
Alan D. Snow
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added pylint and flake8 to test requirements
Alan D. Snow
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updated docstrings to use numpy style
Alan D. Snow
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updated to be flake8
Alan D. Snow
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docstring fix
Alan D. Snow
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flake8 and pylint updates
Alan D. Snow
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updated to pass pylint and flake8
Alan D. Snow
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coding style updates; use GDALGrid to convert raster to polygon
Alan D. Snow
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update to use staticmethods
Alan D. Snow
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Commits on Sep 20, 2017

flake8 fixes
Alan D. Snow
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docstring fix
Alan D. Snow
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make requirements vertical
Alan D. Snow
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replaced print with log
Alan D. Snow
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updated to pass pylint and flake8
Alan D. Snow
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update to use equations; flake8 and pylint fixes
Alan D. Snow
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pylint and flake8 fixes; remove merge as untested
Alan D. Snow
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update location to travis
Alan D. Snow
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remove unnecessary line
Alan D. Snow
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updated docstring and xrange import
Alan D. Snow
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Commits on Sep 21, 2017

add missing comma
Alan D. Snow
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updated to pass pylint and flake8
Alan D. Snow
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reorder attributes
Alan D. Snow
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updated to print warning instead of throw exception
Alan D. Snow
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added inflow to flake8 and pylint
Alan D. Snow
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updated to pass pylint and flake8
Alan D. Snow
committed
updated to pass pylint and flake8
Alan D. Snow
committed

Commits on Sep 22, 2017

updatet to pass pylint & flake8
Alan D. Snow
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bug fix; pylint and flake8 fixes
Alan D. Snow
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flake8 and pylint for all of RAPIDpy
Alan D. Snow
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added print test
Alan D. Snow
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bug fix initial condition
Alan D. Snow
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to version 2.6.0
Alan D. Snow
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added test for extract largest sub network
Alan D. Snow
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move duplicate code to method
Alan D. Snow
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added tests for RAPIDDataset exceptions
Alan D. Snow
committed
Merge pull request #30 from erdc/flake8
snowman2
authored
updated badges to erdc from erdc-cm
Alan D. Snow
committed

Commits on Jun 5, 2018

Update lsm_rapid_process.py
msouff
authored

Commits on Jun 21, 2018

first commit
xhqiao89
committed

Commits on Jun 27, 2018

Commits on Jul 17, 2018

first
xhqiao89
committed

Commits on Jul 24, 2018

convert to incremental
xhqiao89
committed

Commits on Jul 27, 2018

add initialization function
xhqiao89
committed

Commits on Sep 6, 2018

fix
xhqiao89
committed

Commits on Sep 29, 2018

change init file path
xhqiao89
committed

Commits on Sep 30, 2018

change init file rule
xhqiao89
committed

Commits on Apr 29, 2019

remove useless comments
xhqiao89
committed