Add short reads #161
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Add short reads #161
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…espectively for interval frag length to allow for customization of short read length
- fixed output for short read column to be a fraction, not total count.
- When `--summary-stats` flag is specified, some helpful statistics are appended to the end of the output file (if also specified) as comment lines
- When `--short-fraction=n` is specified, a short fraction of n is caculated and included in summary stats and/or histogram.
- When a fragement overlaps end of a chrom (like in mitochondrial DNA), this is handled with a Warning and skipped
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Changed
short_readsand--short-readsoptions to python API and CLI respectively for interval frag length to allow for customization of short read length--summary-statsand--short-fractionoptions tofrag-length-bins. When--summary-statsflag is specified, some helpful statistics are appended to the end of the output file (if also specified) as comment lines. When--short-fraction={n}is specified, a short fraction ofnis calculated and included in summary stats and/or histogram.Fixed