Update indigo to 1.34.0

rst/download/bingo.rst

@@ -15,7 +15,7 @@ Latest release
 .. toctree::
     :maxdepth: 1
 
-    bingo/bingo-1.33.0.rst
+    bingo/bingo-1.34.0.rst
 
 
 Older releases
@@ -24,6 +24,7 @@ Older releases
 .. toctree::
     :maxdepth: 1
 
+    bingo/bingo-1.33.0.rst
     bingo/bingo-1.32.0.rst
     bingo/bingo-1.31.0.rst
     bingo/bingo-1.30.1.rst

rst/download/bingo/bingo-1.34.0.rst

@@ -0,0 +1,49 @@
+Bingo 1.34.0
+------------
+
+The changelog is available `on this page <../../indigo/release-notes/indigo-1.34.0.html>`__
+
+.. list-table:: 
+   :header-rows: 1
+   :stub-columns: 1
+   :widths: 28 24 24 24
+
+   * - 
+     - |image0| Linux
+     - |image1| Windows
+     - |image2| Mac OS
+   * - Oracle
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-oracle-linux-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-oracle-windows-msvc-x86_64.zip>`__
+     - binaries upon request.
+   * - PostgreSQL 17
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-17-linux-x86_64.zip>`__
+     - \-
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-17-macos-x86_64.zip>`__  
+   * - PostgreSQL 16
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-16-linux-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-16-windows-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-16-macos-x86_64.zip>`__  
+   * - PostgreSQL 15
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-15-linux-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-15-windows-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-15-macos-x86_64.zip>`__  
+   * - PostgreSQL 14
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-14-linux-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-14-windows-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-14-macos-x86_64.zip>`__  
+   * - PostgreSQL 13
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-13-linux-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-13-windows-x86_64.zip>`__
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-postgres-13-macos-x86_64.zip>`__
+   * - Microsoft SQL Server
+     - \-
+     - `64-bit <https://lifescience.opensource.epam.com/downloads/bingo-1.34.0/bingo-sqlserver-windows-latest-x86_64.zip>`__
+     - \-
+
+`Source code on GitHub <http://github.com/epam/indigo>`__
+
+
+.. |image0| image:: ../../assets/Linux.png
+.. |image1| image:: ../../assets/Windows.png
+.. |image2| image:: ../../assets/AppleSZ.png

rst/download/indigo.rst

@@ -15,14 +15,15 @@ Latest release
 .. toctree::
     :maxdepth: 1
 
-    indigo/indigo-1.33.0.rst
+    indigo/indigo-1.34.0.rst
 
 Older releases
 --------------
 
 .. toctree::
     :maxdepth: 1
 
+    indigo/indigo-1.33.0.rst
     indigo/indigo-1.32.0.rst
     indigo/indigo-1.31.0.rst
     indigo/indigo-1.30.1.rst

rst/download/indigo/indigo-1.34.0.rst

@@ -0,0 +1,98 @@
+
+.. toctree::
+  :hidden:
+  :includehidden:
+
+  ../../indigo/release-notes/index.rst
+
+
+Indigo 1.34.0
+-------------
+
+Language Bindings
+~~~~~~~~~~~~~~~~~
+
+.. list-table:: 
+   :header-rows: 0
+   :stub-columns: 1
+
+   * - |p-icon| Python 
+     - `indigo-python.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-python.zip>`__
+   * - |j-icon| Java 
+     - `indigo-java.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-java.zip>`__
+   * - |c-icon| .NET 
+     - `indigo-dotnet.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-dotnet.zip>`__
+   * - |n-icon| Native Libraries in one archive
+     - `indigo-native-shared-libs.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-native-shared-libs.zip>`__
+
+
+Platform/CPU Bindings
+~~~~~~~~~~~~~~~~~~~~~
+
+.. list-table:: 
+   :header-rows: 1
+   :stub-columns: 1
+
+   * - 
+     - |image0| Linux
+     - |image1| Windows
+     - |image2| Mac OS
+   * - |n-icon| Native Libraries x64
+     - `indigo-libs-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-linux-x86_64.zip>`__
+     - `indigo-libs-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-windows-x86_64.zip>`__
+     - `indigo-libs-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-macos-x86_64.zip>`__
+   * - 
+     -
+     - `indigo-libs-windows-mingw-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-windows-mingw-x86_64.zip>`__
+     -
+   * - |n-icon| Native Libraries ARM64
+     - `indigo-libs-linux-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-linux-aarch64.zip>`__
+     - \-
+     - `indigo-libs-macos-aarch64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-macos-aarch64.zip>`__
+   * - |n-icon| Native Libraries i386
+     - \-
+     - `indigo-libs-windows-i386.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-libs-windows-i386.zip>`__
+     - \-
+   * - |n-icon| Utilities x64
+     - `indigo-utils-linux-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-utils-linux-x86_64.zip>`__
+     - `indigo-utils-windows-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-utils-windows-x86_64.zip>`__
+     - `indigo-utils-macos-x86_64.zip <https://lifescience.opensource.epam.com/downloads/indigo-1.34.0/indigo-utils-macos-x86_64.zip>`__
+
+Source code
+~~~~~~~~~~~
+
+`Source code zip <https://github.com/epam/Indigo/archive/indigo-1.34.0.zip>`__
+
+`Repository on GitHub <https://github.com/epam/Indigo>`__
+
+
+NuGet Repository
+~~~~~~~~~~~~~~~~
+
+Indigo .NET packages available at `Nuget <https://www.nuget.org/packages/Indigo.Net/>`__
+
+Just add ``Indigo.Net`` as a dependency into the project.
+
+PyPi package
+~~~~~~~~~~~~
+
+Indigo Python SDK can be found at `PyPi <https://pypi.org/project/epam.indigo/>`__
+
+One can install the Indigo library using *pip* utility
+
+
+.. code-block:: xml
+
+    pip install epam.indigo
+
+
+
+.. |image0| image:: ../../assets/Linux.png
+.. |image1| image:: ../../assets/Windows.png
+.. |image2| image:: ../../assets/AppleSZ.png
+.. |image3| image:: ../../assets/globe.png
+.. |p-icon| image:: ../../assets/indigo/python-icon.png
+.. |j-icon| image:: ../../assets/indigo/java-icon.png
+.. |c-icon| image:: ../../assets/indigo/csharp-icon.png
+.. |n-icon| image:: ../../assets/indigo/native-icon.png
+.. |w-icon| image:: ../../assets/indigo/wasm-icon.png

rst/indigo/release-notes/index.rst

@@ -7,6 +7,7 @@ Contents:
 .. toctree::
     :maxdepth: 2
 
+    indigo-1.34.0
     indigo-1.33.0
     indigo-1.32.0
     indigo-1.31.0

rst/indigo/release-notes/indigo-1.34.0.md

@@ -0,0 +1,24 @@
+# Indigo 1.34.0
+Released 2025-08-21
+
+## Features
+* [2899](https://github.com/epam/Indigo/issues/2899) Peptide sequence should be auto-deceted at insert
+* [2958](https://github.com/epam/Indigo/issues/2958) Map molfile monomers onto library monomers on import
+* [2967](https://github.com/epam/Indigo/issues/2967) Support for marking of nucleotide components
+* [2952](https://github.com/epam/Indigo/issues/2952) Expand c api to return CIP labels
+
+## Bugfixes and improvements
+* [2929](https://github.com/epam/Indigo/issues/2929) Isoelectric Point calculation formula seems to be wrong
+* [2964](https://github.com/epam/Indigo/issues/2964) System loads base as sugar
+* [2985](https://github.com/epam/Indigo/issues/2985) Incorrect Implementation of PKA calculation 
+* [2926](https://github.com/epam/Indigo/issues/2926) Atom weights in indigo should be updated according to last IUPAC data
+* [2936](https://github.com/epam/Indigo/issues/2936) System doesn't calculate melting temperature for mix of nucleotides/nucleosides and unsplit nucleotides/unsplit nucleosides
+* [2965](https://github.com/epam/Indigo/issues/2965) System shouldn't allow to export molecules to 3-letter sequence format
+* [2989](https://github.com/epam/Indigo/issues/2989) Export (and import) of sequence of nucleosides to HELM works wrong (doesn't work for import)
+* [2993](https://github.com/epam/Indigo/issues/2993) System shouldn't consider closing bracket as part of name
+* [2998](https://github.com/epam/Indigo/issues/2998) Input fields for ion concentration and oligonucleotides become inactive after entering excessively long number
+* [2970](https://github.com/epam/Indigo/issues/2970) Rendering CIP labels breaks the generated svg for firefox
+* [3014](https://github.com/epam/Indigo/issues/3014) Wrong bingo-postgres-linux version
+
+
+**Full Changelog**: https://github.com/epam/Indigo/compare/indigo-1.33.0-rc.1...indigo-1.34.0

rst/newsfeed.rst

@@ -7,6 +7,31 @@ News
     newsfeed
     release-notes/index
 
+Indigo and Bingo 1.34.0 released
+--------------------------------
+
+*21 August 2025*
+
+We are happy to announce that a new version 1.34.0 of Indigo toolkit and Bingo is released.
+
+* |indigo_1_34_0_notes|
+
+* |indigo_1_34_0_downloads|
+
+* |bingo_1_34_0_downloads|
+
+.. |indigo_1_34_0_notes| raw:: html
+
+   <a href="indigo/release-notes/indigo-1.34.0.html" target="_blank">Release Notes</a>
+
+.. |indigo_1_34_0_downloads| raw:: html
+
+   <a href="download/indigo/indigo-1.34.0.html" target="_blank">Indigo Downloads</a>
+
+.. |bingo_1_34_0_downloads| raw:: html
+
+   <a href="download/bingo/bingo-1.34.0.html" target="_blank">Bingo Downloads</a>
+
 Indigo and Bingo 1.33.0 released
 --------------------------------