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Workflows implementation progress
Yulia Kamyshova edited this page Apr 17, 2020
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11 revisions
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Implemented: Code is written, integration tests are prepared and passing, manually tested with the
dummydatasets -
Tested: Tested manually using the
realdatasets - Documented: Step-by-step workflow setup/usage instructions are provided
| # | Priority | Workflow | Implemented | Tested | Documented |
|---|---|---|---|---|---|
| 1 | High | scRnaExpression_CellRanger_Fastq | yes | yes | SCRnaExpressionCellRangerFastqWorkflow |
| 2 | High | scImmuneProfile_CellRanger_Fastq | yes | yes | SCImmuneProfileCellRangerFastqWorkflow |
| 3 | High | RnaExpression_Fastq | yes | yes | RnaExpressionFastqWorkflow |
| 4 | High | DnaAmpliconVar_Fastq | yes | yes | DnaAmpliconVarFastqWorkflow |
| 5 | High | DnaCaptureVar_Fastq | yes | yes | DnaCaptureVarFastqWorkflow |
| 6 | Low | RnaFusion_Fastq | yes | yes | RnaFusionFastqWorkflow |
| 7 | Low | RnaExpression_Bam | yes | yes | RnaExpressionBamWorkflow |
| 8 | Low | DnaAmpliconVar_Bam | yes | yes | DnaAmpliconVarBamWorkflow |
| 9 | Low | DnaCaptureVar_Bam | yes | yes | DnaCaptureVarBamWorkflow |
| 10 | Low | DnaWgsVar_Bam | yes | yes | DnaWgsVarBamWorkflow |
| 11 | Low | Bam2Fastq | yes | yes | Bam2FastqWorkflow |
| 12 | Low | TcrRepertoire_Fastq | yes | yes | TcrRepertoireFastqWorkflow |
| 13 | Low | HlaTyping_Fastq | yes | yes | HlaTypingFastqWorkflow |
| 14 | Low | scRnaExpression_Bam | yes | yes | ScRnaExpressionBamWorkflow |
| 15 | Low | scRnaExpression_Fastq | yes | yes | ScRnaExpressionFastqWorkflow |
| 16 | Low | DnaWgsVar_Fastq | yes | yes | DnaWgsVarFastqWorkflow |
| 17 | Low | RnaCaptureVar_Fastq | yes | yes | RnaCaptureVarFastqWorkflow |