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Support for local execution

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

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Milestone 4

Explore building the Singularity image with Travis

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

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Milestone 4

Figure out how gvanno can fit in to the workflow

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#32 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

Upgrade Singularity to the latest supported version on TSD

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

Upgrade GATK to the latest version

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

Potential issue if we officially support exome (interval file) data analysis

questionFurther information is requestedFurther information is requested

Status: Open.

#29 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

Run hap.py on wgs output files

Status: Open.

#28 In elixir-no-nels/Selma;

· oskarvid opened on Feb 19, 2020

Add version numbers where necessary

Status: Open.

#27 In elixir-no-nels/Selma;

· oskarvid opened on Feb 17, 2020

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Milestone 3

Inform user of which sample/s failed

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In elixir-no-nels/Selma;

· oskarvid opened on Feb 17, 2020

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Milestone 3

Reconsider how the -e flag should function

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In elixir-no-nels/Selma;

· oskarvid opened on Feb 11, 2020

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Milestone 3

Remove code from the settings file

enhancementNew feature or requestNew feature or request

Status: Open.

#24 In elixir-no-nels/Selma;

· oskarvid opened on Feb 11, 2020

·  

Milestone 3

Required parameter "-o" not detected as missing if not present.

bugSomething isn't workingSomething isn't working

Status: Open.

#21 In elixir-no-nels/Selma;

· kjellp opened on Jan 24, 2020

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Milestone 3