Migrate deploy branch to waveslab.org and add rsync deploy workflow

.github/workflows/deploy.yml

@@ -0,0 +1,59 @@
+name: Deploy Waveslab Site
+
+on:
+  push:
+    branches:
+      - deploy
+
+concurrency:
+  group: waveslab-deploy-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Set up Ruby
+        uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: .ruby-version
+          bundler-cache: false
+
+      - name: Install Bundler
+        run: gem install bundler -v 2.6.9
+
+      - name: Install dependencies
+        run: bundle _2.6.9_ install --jobs 4 --retry 3
+
+      - name: Build site
+        run: JEKYLL_ENV=production bundle _2.6.9_ exec jekyll build
+
+      - name: Verify build output
+        run: |
+          test -d _site
+          test -f _site/index.html
+
+      - name: Configure SSH key
+        env:
+          DEPLOY_SSH_KEY: ${{ secrets.DEPLOY_SSH_KEY }}
+          DEPLOY_HOST: ${{ secrets.DEPLOY_HOST }}
+        run: |
+          mkdir -p ~/.ssh
+          chmod 700 ~/.ssh
+          printf '%s\n' "$DEPLOY_SSH_KEY" > ~/.ssh/deploy_key
+          chmod 600 ~/.ssh/deploy_key
+          ssh-keyscan -H "$DEPLOY_HOST" >> ~/.ssh/known_hosts
+
+      - name: Deploy with rsync
+        env:
+          DEPLOY_HOST: ${{ secrets.DEPLOY_HOST }}
+          DEPLOY_USER: ${{ secrets.DEPLOY_USER }}
+          DEPLOY_PATH: ${{ secrets.DEPLOY_PATH }}
+        run: |
+          rsync -az --delete \
+            -e "ssh -i ~/.ssh/deploy_key -o StrictHostKeyChecking=yes" \
+            _site/ "${DEPLOY_USER}@${DEPLOY_HOST}:${DEPLOY_PATH}"

_config.yml

@@ -12,8 +12,8 @@ title                    : "Water, Vegetation, & Society"
 title_separator          : "-"
 name                     : "Kelly Caylor"
 description              : "Understanding the coupled dynamics of water, vegetation and ecosystem services in drylands."
-url                      : http://caylor.eri.ucsb.edu # the base hostname & protocol for your site e.g. "https://mmistakes.github.io"
-baseurl                  : # the subpath of your site, e.g. "/blog"
+url                      : https://waveslab.org # the base hostname & protocol for your site e.g. "https://mmistakes.github.io"
+baseurl                  : ""
 repository               : # GitHub username/repo-name e.g. "mmistakes/minimal-mistakes"
 teaser                   : /assets/images/publications/placeholder.png # Global fallback for missing publication images
 # breadcrumbs            : false # true, false (default)

_pages/postdocs_2018.md

@@ -24,15 +24,15 @@ Two research (Associate Specialist) positions are available within the Water, Ve
 
 ## Riparian Ecohydrological Dynamics
 
-The first position is in the area of riparian ecohydrological dynamics. The WAVES lab ([caylor.eri.ucsb.edu](http://caylor.eri.ucsb.edu)) is participating in two multi-institutional projects that seek to develop novel insight into the the sustainability and resilience of riparian forest ecosystems and tools for quantitative support of land/water conservation management plans in arid and semi-arid landscapes across the southwestern US and southern France. Our project goals are to detect and assess the responses of sensitive riparian forests to drought stress over recent decades, and to generalize these responses through modeling of a warming/drying climate punctuated by variable rainfall. 
+The first position is in the area of riparian ecohydrological dynamics. The WAVES lab ([waveslab.org]({{ '/' | absolute_url }})) is participating in two multi-institutional projects that seek to develop novel insight into the the sustainability and resilience of riparian forest ecosystems and tools for quantitative support of land/water conservation management plans in arid and semi-arid landscapes across the southwestern US and southern France. Our project goals are to detect and assess the responses of sensitive riparian forests to drought stress over recent decades, and to generalize these responses through modeling of a warming/drying climate punctuated by variable rainfall. 
 
 A successful candidate's duties would include, under supervision and within a multi-institution team environment: (1) developing and implementing landscape-scale models of riparian ecohydrology that incorporate stochastic dynamics of rainfall, surface/subsurface dynamics, plant water use and vegetation stress; (2) integrating and verifying model dynamics against multi-year meteorological data and isotopic records of riparian vegetation water sources; (3) leveraging high-resolution imagery of vegetation function and structure derived from unmanned autonomous vehicles for improved characterization of riparian ecohydrological dynamics.
 
-Additional detail regarding this research effort can be found [here](http://caylor.eri.ucsb.edu/2018/01/28/riparian-ecohydrology-awards/). Interested individuals can appy [here](https://recruit.ap.ucsb.edu/apply/JPF01253).
+Additional detail regarding this research effort can be found [here]({% link _posts/2018-01-28-funding-new-awards-for-riparian-ecohydrology.md %}). Interested individuals can appy [here](https://recruit.ap.ucsb.edu/apply/JPF01253).
 
 ## Coupled Natural-Human System Modeling
 
-The second position is in the area of coupled natural-human system modeling. The WAVES lab (caylor.eri.ucsb.edu) is conducting research that seeks to reveal the dynamics of production and consumption of food, energy, and water resources in sub-Saharan Africa, and use these revelations to develop solutions that can better sustain coupled food, energy, and water systems through improved multi-scale, multi-resource governance. 
+The second position is in the area of coupled natural-human system modeling. The WAVES lab ([waveslab.org]({{ '/' | absolute_url }})) is conducting research that seeks to reveal the dynamics of production and consumption of food, energy, and water resources in sub-Saharan Africa, and use these revelations to develop solutions that can better sustain coupled food, energy, and water systems through improved multi-scale, multi-resource governance. 
 
 A successful candidate's duties would include, under supervision and within a multi-institution team environment: (1) developing and implementing models of coupled natural-human systems within smallholder agricultural settings; (2) integrating and verifying model dynamics against novel data sets of high-frequency, co-located in-situ observations of agricultural decision making and crop/climate dynamics; (3) leading the authorship of research manuscripts for publication based on model development and applications.
 

_people/chang.md

@@ -18,7 +18,7 @@ title: Elliot Chang, Undergraduate Student, Isotope Hydrology (2013-2016)
 <span class="s1">Elliot Chang, a New York City native, graduated in the Spring 2016 with a Civil and Environmental Engineering degree and a Sustainable Energy certificate.</span>
 </p>
 <p class="p1">
-<span class="s1">Throughout his undergraduate education, Elliot has persisted in studying removal methods of volatile organic compounds that cause spectral interference in isotope ratio infrared spectrometry measurements of plant/soil waters. Supported by <a href="https://www.princeton.edu/pei/undergrads/pei-environmental-scholar/" target="_blank">Princeton Environmental Institute’s Smith-Newton Scholarship </a>(2014), he has collaborated with Picarro Inc. (Sunnyvale, CA), Center for Stable Isotope Biogeochemistry (Berkeley, CA), and Princeton NMR Facilities (Princeton, NJ) in reaching his current solution. Elliot’s final work was <a href="http://caylor.eri.ucsb.edu/2016/02/elliot-changs-1st-paper-featured-on-the-cee-website/" target="_blank">published in RCMS in January 2016</a>, and the developed purification protocol is patent pending.</span>
+<span class="s1">Throughout his undergraduate education, Elliot has persisted in studying removal methods of volatile organic compounds that cause spectral interference in isotope ratio infrared spectrometry measurements of plant/soil waters. Supported by <a href="https://www.princeton.edu/pei/undergrads/pei-environmental-scholar/" target="_blank">Princeton Environmental Institute’s Smith-Newton Scholarship </a>(2014), he has collaborated with Picarro Inc. (Sunnyvale, CA), Center for Stable Isotope Biogeochemistry (Berkeley, CA), and Princeton NMR Facilities (Princeton, NJ) in reaching his current solution. Elliot’s final work was <a href="{% post_url 2016-02-14-elliot-changs-1st-paper-featured-on-the-cee-website %}" target="_blank">published in RCMS in January 2016</a>, and the developed purification protocol is patent pending.</span>
 </p>
 <p class="p1">
   Elliot started his PhD at UC Berkeley in the Fall 2016, under <a href="https://nature.berkeley.edu/~lnlammers/index.html" target="_blank">Pr. Laura Lammers</a>.
@@ -27,5 +27,5 @@ title: Elliot Chang, Undergraduate Student, Isotope Hydrology (2013-2016)
 <span class="s1">When he is not working, Elliot is a concert composer. His most recent commissions include an orchestral work premiere by the Sinfonia Orchestra in Richardson Auditorium and a string orchestra piece to be premiered by the United Nations International School at Carnegie Hall in 2016.</span>
 </p>
 <p class="p1">
-  The picture above shows Elliot and <a href="http://caylor.eri.ucsb.edu/portfolio-item/adam-wolf-postdoctoral-research-associate/" target="_blank">Adam</a> at the Silas Little Experimental Forest.
-</p>
+  The picture above shows Elliot and <a href="{{ site.baseurl }}{% link _people/wolf.md %}" target="_blank">Adam</a> at the Silas Little Experimental Forest.
+</p>

_people/duwan.md

@@ -17,4 +17,4 @@ title: Connor Duwan, Laboratory Learning Intern & Hutchins Scholar (2015)
 
 
 
-Connor is a senior at <a href="http://www.lawrenceville.org/" target="_blank">The Lawrenceville School</a> and worked in our lab in the summer 2015 through the Hutchins Scholars program. He worked with <a href="http://caylor.eri.ucsb.edu/portfolio-item/cynthia-gerlein-phd-student-2/" target="_blank">Cynthia</a> on the relative influence of foliar uptake and foliar shielding on leaf water isotopes. He also designed a new protocol for the fast assessment of leaf contact angle.
+Connor is a senior at <a href="http://www.lawrenceville.org/" target="_blank">The Lawrenceville School</a> and worked in our lab in the summer 2015 through the Hutchins Scholars program. He worked with <a href="{{ site.baseurl }}{% link _people/gerlein-safdi.md %}" target="_blank">Cynthia</a> on the relative influence of foliar uptake and foliar shielding on leaf water isotopes. He also designed a new protocol for the fast assessment of leaf contact angle.

_people/odonnell.md

@@ -16,4 +16,4 @@ title: James O'Donnell, Laboratory Learning Intern & Hutchins Scholar (2014
 
 
 
-Jimmy is a rising senior at <a href="http://www.lawrenceville.org/" target="_blank">The Lawrenceville School</a> and worked in our lab during the summer of 2014 through the Hutchins Scholars program. He worked with <a href="http://caylor.eri.ucsb.edu/portfolio-item/elliot-chang-undergraduate-student-isotope-hydrology/" target="_blank">Elliot</a> on testing the use of alginate and chitosan beads for organics removal in plant water samples. Jimmy was also in charge of collecting and processing the samples for the water theft project at Silas Little Experimental Forest. And when he was not busy with those two projects, he even found the time to learn how to use an Arduino and might soon be the latest recruit of the <a href="http://pulselab.princeton.edu/" target="_blank">PulseLab</a>.
+Jimmy is a rising senior at <a href="http://www.lawrenceville.org/" target="_blank">The Lawrenceville School</a> and worked in our lab during the summer of 2014 through the Hutchins Scholars program. He worked with <a href="{{ site.baseurl }}{% link _people/chang.md %}" target="_blank">Elliot</a> on testing the use of alginate and chitosan beads for organics removal in plant water samples. Jimmy was also in charge of collecting and processing the samples for the water theft project at Silas Little Experimental Forest. And when he was not busy with those two projects, he even found the time to learn how to use an Arduino and might soon be the latest recruit of the <a href="http://pulselab.princeton.edu/" target="_blank">PulseLab</a>.

_people/sinkler.md

@@ -16,6 +16,6 @@ title: Craig Sinkler, Summer Research Intern (2014)
 
 
 
-Craig came to the Caylor Lab as a rising senior from <a href="http://www.rider.edu/" target="_blank">Rider University</a>, majoring in Environmental Science and minoring in Biology. In the summer of 2014, Craig worked with <a href="http://caylor.eri.ucsb.edu/portfolio-item/cynthia-gerlein-phd-student-2/" target="_blank">Cynthia</a>, looking at foliar uptake in Colocasia Esculenta using isotopically labelled water and an array of isotope analysis. Craig also helped <a href="http://caylor.eri.ucsb.edu/portfolio-item/adam-wolf-postdoctoral-research-associate/" target="_blank">Adam</a> with the fieldwork at Silas Little, as you can see in the picture on the left.
+Craig came to the Caylor Lab as a rising senior from <a href="http://www.rider.edu/" target="_blank">Rider University</a>, majoring in Environmental Science and minoring in Biology. In the summer of 2014, Craig worked with <a href="{{ site.baseurl }}{% link _people/gerlein-safdi.md %}" target="_blank">Cynthia</a>, looking at foliar uptake in Colocasia Esculenta using isotopically labelled water and an array of isotope analysis. Craig also helped <a href="{{ site.baseurl }}{% link _people/wolf.md %}" target="_blank">Adam</a> with the fieldwork at Silas Little, as you can see in the picture on the left.
 
-Craig is now working for the environmental consulting group <span class="s1"><a href="http://www.earthres.com/" target="_blank">EarthRes</a>.</span>
+Craig is now working for the environmental consulting group <span class="s1"><a href="http://www.earthres.com/" target="_blank">EarthRes</a>.</span>

_people/spiegel.md

@@ -16,10 +16,10 @@ title: Marcus Spiegel, Undergraduate Student, Agricultural Modeling (2014-2016)
 
 <span style="color: #000000;"></span>
 <p>
-  Marcus Spiegel is a sophomore in the Civil and Environmental Engineering Department.  He was a Grand Challenges Intern in summer 2014 working with <a href="http://caylor.eri.ucsb.edu/portfolio-item/keita-decarlo-phd-student/" target="_blank">Keita DeCarlo</a> on the biological controls of soil cracking in a Kenyan dryland system.</p>
+  Marcus Spiegel is a sophomore in the Civil and Environmental Engineering Department.  He was a Grand Challenges Intern in summer 2014 working with <a href="{{ site.baseurl }}{% link _people/decarlo.md %}" target="_blank">Keita DeCarlo</a> on the biological controls of soil cracking in a Kenyan dryland system.</p>
 <p>
-  In the Spring of 2015, Marcus received a <a href="http://www.princeton.edu/pei/undergrads/pei-environmental-scholar/" target="_blank">Smith-Newton Scholarship</a> from the Princeton Environmental Institute to conduct his own research project within the Ecohydrology Lab. Marcus will be modeling agricultural expansion in Zambia, including fieldwork and remote sensing data into his analysis. You can read more details about his project <a href="http://caylor.eri.ucsb.edu/2015/03/marcus-spiegel-receives-smith-newton-scholarship/" target="_blank">HERE</a>.
+  In the Spring of 2015, Marcus received a <a href="http://www.princeton.edu/pei/undergrads/pei-environmental-scholar/" target="_blank">Smith-Newton Scholarship</a> from the Princeton Environmental Institute to conduct his own research project within the Ecohydrology Lab. Marcus will be modeling agricultural expansion in Zambia, including fieldwork and remote sensing data into his analysis. You can read more details about his project <a href="{% post_url 2015-03-28-marcus-spiegel-receives-smith-newton-scholarship %}" target="_blank">HERE</a>.
 </p>
 <p>
 
-</p>
+</p>

_posts/2014-07-25-fieldwork-in-california.md

@@ -19,6 +19,6 @@ tags:
 excerpt: "Group members went out to California in June to install sensors in agricultural fields with the goal of realtime monitoring of crop growth and microclimate in control, water limited, and N-limited corn fields."
 
 ---
-Group members went out to California in June to install sensors in agricultural fields with the goal of realtime monitoring of crop growth and microclimate in control, water limited, and N-limited corn fields. <!--more--> As part of the <a href="http://www.pulsepod.io/" target="_blank">PulseLab</a> project, [Adam Wolf]({{ site.baseurl }}{% link _people/wolf.md %}), [Lyndon Estes]({{ site.baseurl }}{% link _people/estes.md %}), [Ben Siegfried]({{ site.baseurl }}{% link _people/siegfried.md %}) and Matteo Kruijssen (PEI Grand Challenge intern working with Lyndon and [Darren Drewry](http://jpl-nasa.academia.edu/DarrenDrewry) from NASA JPL for the summer, as part of a [SURP grant](http://caylor.eri.ucsb.edu/2013/10/two-jpl-surp-grants-received/)) went out in California in June to install sensors in agricultural fields with the goal of realtime monitoring of crop growth and microclimate in control, water limited, and N-limited corn fields. Since crop growth forecasts are largely driven by remote sensing, these observations help to improve space-borne satellite retrievals for modeling, but also provide important constraints to the local microclimate, including temperature and soil moisture, which are critical to improving the predictions of climate change impacts on crop productivity.
+Group members went out to California in June to install sensors in agricultural fields with the goal of realtime monitoring of crop growth and microclimate in control, water limited, and N-limited corn fields. <!--more--> As part of the <a href="http://www.pulsepod.io/" target="_blank">PulseLab</a> project, [Adam Wolf]({{ site.baseurl }}{% link _people/wolf.md %}), [Lyndon Estes]({{ site.baseurl }}{% link _people/estes.md %}), [Ben Siegfried]({{ site.baseurl }}{% link _people/siegfried.md %}) and Matteo Kruijssen (PEI Grand Challenge intern working with Lyndon and [Darren Drewry](http://jpl-nasa.academia.edu/DarrenDrewry) from NASA JPL for the summer, as part of a [SURP grant]({% post_url 2013-10-12-two-jpl-surp-grants-received %})) went out in California in June to install sensors in agricultural fields with the goal of realtime monitoring of crop growth and microclimate in control, water limited, and N-limited corn fields. Since crop growth forecasts are largely driven by remote sensing, these observations help to improve space-borne satellite retrievals for modeling, but also provide important constraints to the local microclimate, including temperature and soil moisture, which are critical to improving the predictions of climate change impacts on crop productivity.
 
-At the end of July, Adam and Ben went out again, to New Mexico this time. You can see the pictures of the pods installation <a href="https://www.flickr.com/photos/9378222@N05/" target="_blank">HERE</a>.
+At the end of July, Adam and Ben went out again, to New Mexico this time. You can see the pictures of the pods installation <a href="https://www.flickr.com/photos/9378222@N05/" target="_blank">HERE</a>.