CATH-FunFam refactoring #415
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Currently, we run
hmmsearchagainst the HMM database of each CATH superfamily identified, then we runcath-resolve-hits. If two FunFam models (from two different CATH superfamilies) hit the same sequence and overlap, their matches will not be resolved bycath-resolve-hitssince they are resolved individually.This PR changes the way we search for FunFam domains. Like in InterProScan 6, we write the output of all
hmmsearchrun to a single file, then resolve this file once.