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the question about prepare the input

Status: Open.

#128 In dylkot/cNMF;

· yuu342 opened on Mar 13, 2026

Applying this tool to cNMF on snATAC-seq peak count data

Status: Open.

#126 In dylkot/cNMF;

· nh-codem opened on Jan 5, 2026

Switch Use_highly_variable to mask_var="highly_variable" in Preprocess

bugSomething isn't workingSomething isn't working

Status: Open.

#125 In dylkot/cNMF;

· dylkot opened on Nov 6, 2025

log10 n_counts plot in filter_adata

bugSomething isn't workingSomething isn't working

Status: Open.

#124 In dylkot/cNMF;

· dylkot opened on Nov 6, 2025

Recommendation on using cNMF for sample-level subtyping

Status: Open.

#123 In dylkot/cNMF;

· linlejiang opened on Oct 29, 2025

Confirm the input data type running cNMF

Status: Open.

#122 In dylkot/cNMF;

· skye187 opened on Oct 8, 2025

Could you please add a scVI batch effect removal module to the package?

Status: Open.

#120 In dylkot/cNMF;

· ZengLi2 opened on Jul 10, 2025

Could you please add a scVI batch effect removal module to the package?

Status: Open.

#119 In dylkot/cNMF;

· ZengLi2 opened on Jul 10, 2025

Question about parallel acceleration in the preprocess module

Status: Open.

#118 In dylkot/cNMF;

· Kleinzhang99 opened on May 26, 2025

Error: The usage_norm is NaN

Status: Open.

#116 In dylkot/cNMF;

· BioinfoXP opened on May 11, 2025

how to choose k

Status: Open.

#115 In dylkot/cNMF;

· Sophielsn opened on Apr 29, 2025

'DataFrame' object has no attribute 'k'

Status: Open.

#114 In dylkot/cNMF;

· james-cranley opened on Mar 5, 2025