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[WIP] Fix memory issue in modkit pileup for methylation data#9

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copilot/fix-modkit-pileup-memory-issue
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[WIP] Fix memory issue in modkit pileup for methylation data#9
Copilot wants to merge 1 commit intomainfrom
copilot/fix-modkit-pileup-memory-issue

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Copilot AI commented Nov 24, 2025

Thanks for asking me to work on this. I will get started on it and keep this PR's description up to date as I form a plan and make progress.

Original prompt

I'm using modkit pileup to get methylation data from a BAM file and it keeps running out of memory. can you show me the modkit pileup options?


✨ Let Copilot coding agent set things up for you — coding agent works faster and does higher quality work when set up for your repo.

Copilot AI requested a review from drtconway November 24, 2025 00:30
@drtconway drtconway closed this Nov 24, 2025
@drtconway drtconway deleted the copilot/fix-modkit-pileup-memory-issue branch November 26, 2025 04:22
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2 participants