For all work using the software in this repository, we ask users to cite the following papers. The first is a recently accepted manuscript whose preprint is currently available on bioRxiv, and we will update the citation upon publication.
Allen C. McBride, Feng Yu, Edward H. Cheng, Aulane Mpouli, Aimee C. Soe, Michal Hammel, Gaetano T. Montelione, Terrence G. Oas, Susan E. Tsutakawa, and Bruce R. Donald. Predicting pose distribution of protein domains connected by flexible linkers is an unsolved problem. Proteins. 2025 Oct 16, doi: 10.1002/prot.70062. Online ahead of print. PMID: 41102979.
Yang Qi, Jeffrey W. Martin, Adam W. Barb, François Thélot, Anthony K. Yan, Bruce R. Donald, and Terrence G. Oas. Continuous Interdomain Orientation Distributions Reveal Components of Binding Thermodynamics. J. Mol. Biol., vol. 430, no. 18 pt B, pp. 3412-3426, Sept, 2018, doi: 10.1016/j.jmb.2018.06.022.
This software supports the first paper above; code authors are Edward H. Cheng and Allen C. McBride.