Version 1.2

This version supports:

• Fix bug when running with user input tree (conflicted with remove identical seq). by @ngfam in #12
• Enable MORPH (via -st MORPH) and BINARY (via -st BIN) by @a2dalek in #16
• MPBoot: Fix compiling on Windows and Mac by @a2dalek in #21

Full Changelog: v1.1.1...v1.2

Version 1.1.1

This version supports:

1. Tree search and bootstrap can start with the user tree if provided
2. Sorting alignment patterns based on the user tree if provided.
3. Identifying identical sequences (in the input alignment) with a faster algorithm.