Remove fista

.flake8

@@ -1,9 +1,9 @@
-[flake8]
-ignore = E203
-exclude = .eggs, *.egg,build, mrinversion/kernel/__init__.py, mrinversion/utils.py
-filename = *.pyx, *.px*, *py
-max-line-length = 88
-max-complexity = 10
-select = C,E,F,W,N8
-count = True
-statistics = True
+[flake8]
+ignore = E203
+exclude = .eggs, *.egg,build, mrinversion/kernel/__init__.py, mrinversion/utils.py, examples/*
+filename = *.pyx, *.px*, *py
+max-line-length = 88
+max-complexity = 10
+select = C,E,F,W,N8
+count = True
+statistics = True

.github/workflows/codeql-analysis.yml

@@ -1,58 +1,58 @@
-# For most projects, this workflow file will not need changing; you simply need
-# to commit it to your repository.
-#
-# You may wish to alter this file to override the set of languages analyzed,
-# or to provide custom queries or build logic.
-name: "CodeQL"
-
-on:
-  # At the end of every day
-  schedule:
-    - cron: '0 0 * * *'
-
-jobs:
-  analyze:
-    name: Analyze
-    runs-on: ubuntu-latest
-
-    strategy:
-      fail-fast: false
-      matrix:
-        # Override automatic language detection by changing the below list
-        # Supported options are ['csharp', 'cpp', 'go', 'java', 'javascript', 'python']
-        language: ['python']
-        # Learn more...
-        # https://docs.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#overriding-automatic-language-detection
-
-    steps:
-    - name: Checkout repository
-      uses: actions/checkout@v6
-
-    # Initializes the CodeQL tools for scanning.
-    - name: Initialize CodeQL
-      uses: github/codeql-action/init@v4
-      with:
-        languages: ${{ matrix.language }}
-        # If you wish to specify custom queries, you can do so here or in a config file.
-        # By default, queries listed here will override any specified in a config file.
-        # Prefix the list here with "+" to use these queries and those in the config file.
-        # queries: ./path/to/local/query, your-org/your-repo/queries@main
-
-    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
-    # If this step fails, then you should remove it and run the build manually (see below)
-    - name: Autobuild
-      uses: github/codeql-action/autobuild@v4
-
-    # ℹ️ Command-line programs to run using the OS shell.
-    # 📚 https://git.io/JvXDl
-
-    # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
-    #    and modify them (or add more) to build your code if your project
-    #    uses a compiled language
-
-    #- run: |
-    #   make bootstrap
-    #   make release
-
-    - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v4
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+name: "CodeQL"
+
+on:
+  # At the end of every day
+  schedule:
+    - cron: '0 0 * * *'
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        # Override automatic language detection by changing the below list
+        # Supported options are ['csharp', 'cpp', 'go', 'java', 'javascript', 'python']
+        language: ['python']
+        # Learn more...
+        # https://docs.github.com/en/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#overriding-automatic-language-detection
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v6
+
+    # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v4
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+        # queries: ./path/to/local/query, your-org/your-repo/queries@main
+
+    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v4
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 https://git.io/JvXDl
+
+    # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines
+    #    and modify them (or add more) to build your code if your project
+    #    uses a compiled language
+
+    #- run: |
+    #   make bootstrap
+    #   make release
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v4

.github/workflows/continuous-integration-pip.yml

@@ -1,66 +1,66 @@
-# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
-# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
-
-name: CI
-
-on:
-  push:
-    branches: [master]
-  pull_request:
-    branches: [master]
-
-jobs:
-  code_lint:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ["3.11"]
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v6
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ matrix.python-version }}
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install flake8
-      - name: Lint with flake8
-        run: |
-          # stop the build if there are Python syntax errors or undefined names
-          flake8 . --count --select=B,C,E,F,W,T,N8 --ignore=E203 --max-line-length=88 --show-source --statistics --exclude="examples/* docs/* build/* utils.py"
-          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=88 --statistics --exclude="examples/* docs/* build/* utils.py"
-
-  test_os:
-    needs: [code_lint]
-    runs-on: "ubuntu-latest"
-    strategy:
-      matrix:
-        python-version: ["3.10", "3.11", "3.12", "3.13"]
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v6
-
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v6
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install setuptools
-          pip install -r requirements-dev.txt
-
-      - name: Build and install package from source
-        run: python setup.py develop
-
-      - name: Test with pytest
-        run: pytest --cov=./ --cov-report=xml
-
-      - name: Upload coverage
-        uses: codecov/codecov-action@v5.5.1
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: CI
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+    branches: [master]
+
+jobs:
+  code_lint:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.11"]
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v6
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install flake8
+      - name: Lint with flake8
+        run: |
+          # stop the build if there are Python syntax errors or undefined names
+          flake8 . --count --select=B,C,E,F,W,T,N8 --ignore=E203 --max-line-length=88 --show-source --statistics --exclude="examples/* docs/* build/* utils.py"
+          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=88 --statistics --exclude="examples/* docs/* build/* utils.py"
+
+  test_os:
+    needs: [code_lint]
+    runs-on: "ubuntu-latest"
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v6
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install setuptools
+          pip install -r requirements-dev.txt
+
+      - name: Build and install package from source
+        run: python setup.py develop
+
+      - name: Test with pytest
+        run: pytest --cov=./ --cov-report=xml
+
+      - name: Upload coverage
+        uses: codecov/codecov-action@v5.5.1

CHANGELOG

@@ -1,30 +1,30 @@
-v0.3.1
-------
-
-What's new!
-'''''''''''
-
-- Simplified plot_3d function
-- Replace fortran code with numba jit python version.
-
-v0.3.0
-------
-
-What's new!
-'''''''''''
-
-- Added T1, T2 relaxation inversion kernel.
-
-v0.2.0
-------
-
-What's new!
-'''''''''''
-
-- Added :func:`~mrinversion.utils.to_Haeberlen_grid` function to convert the 3D :math:`\rho(\delta_\text{iso}, x, y)`
-  distribution to :math:`\rho(\delta_\text{iso}, \zeta_\sigma, \eta_\sigma)` distribution.
-
-Changes
-'''''''
-
-- Update code to comply with updated csdmpy library.
+v0.3.1
+------
+
+What's new!
+'''''''''''
+
+- Simplified plot_3d function
+- Replace fortran code with numba jit python version.
+
+v0.3.0
+------
+
+What's new!
+'''''''''''
+
+- Added T1, T2 relaxation inversion kernel.
+
+v0.2.0
+------
+
+What's new!
+'''''''''''
+
+- Added :func:`~mrinversion.utils.to_Haeberlen_grid` function to convert the 3D :math:`\rho(\delta_\text{iso}, x, y)`
+  distribution to :math:`\rho(\delta_\text{iso}, \zeta_\sigma, \eta_\sigma)` distribution.
+
+Changes
+'''''''
+
+- Update code to comply with updated csdmpy library.