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Introduce germline and somatic SNV workflow support: add new CLI commands for germline SNV calling and a two-step somatic SNV flow (callers + filtering). Extend constants with variant-calling workflow names and analysis/run related keys. Add numerous helper functions in create_metawfr and utils to discover released Illumina/PacBio/ONT files, filesets, retrieve tissues by external id, gather variant-calling outputs, create/validate/post analysis MetaWorkflowRuns, and create AnalysisRun items. Update wrangler utilities with an analysis_overview command and various metadata posting calls to use META_WORKFLOW_RUN. Minor fixes: safer dimension handling, timestamped AnalysisRun identifiers, and small formatting/validation improvements.
Make the --analysis-run CLI option optional and add support for building and validating a somatic SNV filtering MWFR. Introduces new constants (RUFUS and SNV_FILTERING_LONGCALLD), a helper get_analysis_runs_from_tissue in utils, and updates create_metawfr to: resolve a unique analysis run when not provided, collect donor/tissue files and sequencer labels, assemble MWFR inputs/parameters, and call create_and_validate_analysis_mwfr for the filtering workflow. Also comments out Rufus MWFR creation for now and tidies various logging messages.
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