Changed output directory option and added overwrite option#8
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guignonv wants to merge 1 commit intodavidemms:masterfrom
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Changed output directory option and added overwrite option#8guignonv wants to merge 1 commit intodavidemms:masterfrom
guignonv wants to merge 1 commit intodavidemms:masterfrom
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Note: to keep the same behavior as before (ie. all outputs in the same directory as the input fasta), just change the command line:
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By default, SHOOT outputs a serie of files in the same directory as the input FASTA file. This PR changes that behavior so output files are by default put into a "input_file_path.shoot" directory instead. It is possible to change the default output directory to a specified one using the new "-d " option (or "--ouput_directory ").
It is therefore possible to check for previous computation and abort to prevent overwriting. To force overwriting, a new option has been added: "--overwrite".