add argparse and comments to filter_cs.py#11
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slowkow wants to merge 1 commit intodavidaknowles:masterfrom
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add argparse and comments to filter_cs.py#11slowkow wants to merge 1 commit intodavidaknowles:masterfrom
slowkow wants to merge 1 commit intodavidaknowles:masterfrom
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Add command line arguments to the `filter_cs.py` script, so the user can decide what options to use for: - minimum intron length - minimum overlap between the read and the 2 exons spanned by the read - minimum mapping quality of the alignment Also add some comments to help the reader understand the code.
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Add command line arguments to the
filter_cs.pyscript, so the user candecide what options to use for:
Also add some comments to help the reader understand the code.