Releases: datngu/LmTag
LmTag v0.2.0
09 April 2022: v0.2.0
Adding model interaction. Now LmTag supports 2 models:
The linear option models imputation accuracy of a linear funcion of: Imputation_accuracy ~ LD + MAF_tagSNP + MAF_taggedSNP + distance. This model was used in previous versions.
The interaction option models imputation accuracy of a linear funcion with interaction term of LD and MAF_taggedSNP: Imputation_accuracy ~ LD + MAF_tagSNP + MAF_taggedSNP + distance + LD:MAF_taggedSNP.
In our experiments, the interaction model provides slightly better performance, but it is not significant. We still recommend users use the linear model for better interpretability.
User-friendly interface.
We created 2 scripts model_pipeline.sh, and LmTag_pipeline.sh that provide a more friendly interface for users.
We also provide a docker image that can run the LmTag easily.
Details instructions and tutorials for using the two wrappers and docker image is in the sub-directory: docker.