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Here are all the changes from our recent HWO-Bioverse project. We might not want to integrate all of these changes. In particular, the hypothesis testing changes might want to be part of another pull request. Also simulating HWO is now done within a separate HWOSurvey instead of the standard direct imaging survey. We may want to merge HWOSurvey and ImagingSurvey.

The HWOSurvey object slightly modifies the standard Bioverse workflow, as the survey object is initialized before the Generator object. This so that we can select targets by running the exposure time calculator, which needs information about the telescope/mission design.

This is just a draft pull request so that we can compare and reconcile the differences. I might make a new branch of the main bioverse branch and copy and paste the changes we'd want to keep as individual commits.

Noah

nwtuchow added 30 commits March 14, 2024 16:46
now uses phase angle and angular separation rather than assuming planets are at quadrature
This reverts commit 40b8104.
updated util.py with functions to calculate exposure time.
working on integrating exposure time calculator into it
Added HWO Survey Object and exposure time calculator
Also added lambertian_phase to utils
Now uses compute_contrast as a separate step from geometric albedo
Added contrast calculation as a separate step in the default case
Default reset imaging generator function wasn't reseting it to be the same as the default pickle file. Default  pickle file used SAG13 rather than bergsten occurrence rates.
Also tested and debugged function in generator
Default reset imaging generator function wasn't reseting it to be the same as the default pickle file. Default  pickle file used SAG13 rather than bergsten occurrence rates.
This reverts commit 40b8104.
updated util.py with functions to calculate exposure time.
working on integrating exposure time calculator into it
Also tested and debugged function in generator
Now is more consistent with the names of properties in bioverse
now fitting returns best fit for null hypothesis as well
now able to change name of columns used for exposure time calculator
now calculates "accurate" yields, creates survey plan before generating planets
Update master with development branch
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