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The original
helpers.canonical_transcriptswas not well tested (or even used much as far as I know).@EFraim, this uses your PR #156 but I was unable to update it myself and fix the merge conflict (because understandably your master branch as diverged in the 2 yrs since you've addressed this!)
Eventually I would like to modularize this to instead have a method on the
FeatureDBthat finds the canonical transcript for a gene, and have the sequence part dealt with separately, e.g.,but that will be later...