increased timeout.

.github/workflows/test_ci_local.yml

@@ -0,0 +1,78 @@
+# This is a basic workflow to help you get started with Actions
+
+name: CI-local
+
+# Controls when the action will run. 
+on:
+  # Triggers the workflow on push or pull request events but only for the reorganize branch
+  push:
+    branches: [ master, develop ]
+  pull_request:
+    branches: [ master, develop ]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+
+      - name: Setup
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.6
+
+      # Log in to docker hub. 
+      - name: Login to Docker Hub
+        uses: docker/login-action@v1
+        with:  
+          username: ${{ secrets.DOCKER_HUB_USERNAME }}
+          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} 
+
+
+      # Runs a single command using the runners shell
+      - name: Installation
+        run: |
+          cd $GITHUB_WORKSPACE
+          wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+          bash miniconda.sh -b -p $HOME/miniconda
+          source "$HOME/miniconda/etc/profile.d/conda.sh"
+          hash -r
+          conda config --set always_yes yes --set changeps1 no
+          conda update -q conda
+          conda config --append envs_dirs $HOME/miniconda/envs 
+          conda create -n neurocaas
+          conda activate neurocaas
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+          pip install aws-sam-cli==0.53.0 
+          pip install localstack==0.12.3
+          pip install ./ 
+          sudo apt-get install jq
+
+      - name: Pull hello-world image
+        run: docker pull hello-world
+
+      - name: Start localstack    
+        run: localstack start --host 
+
+      - name: Run tests
+        run: |
+          echo $HOME $GITHUB_WORKSPACE "locations."
+          ls $HOME/miniconda/bin
+          ls $HOME/miniconda/envs
+          conda config --describe envs_dirs
+          conda env list
+
+          pytest tests/protocol_tests/test_submit_start.py
+        env:
+          AWS_DEFAULT_REGION: "us-east-1"
+

.gitignore

@@ -139,7 +139,8 @@ dmypy.json
 
 # Permissions files: 
 ncap_iac/utils/policies
-ncap_iac/user_profiles/*
+!ncap_iac/utils/policies/lambda_role_assume_role_doc.json
+!ncap_iac/utils/policies/lambda_role_base_policy_doc_minimal.json
 !ncap_iac/user_profiles/*/user_config_template.json
 
 # Build files: 
@@ -156,7 +157,8 @@ ncap_iac/ncap_blueprints/*/compiled_packaged.yaml
 ncap_iac/user_profiles/*/compiled_users.json
 ncap_iac/user_profiles/*/.aws-sam/
 ncap_iac/user_profiles/*/compiled_users.yaml
-!docs/source/
+docs/build
+!docs/source
 !docs/devguide.md
 !docs/Makefile
 !docs/make.bat