Skip to content

add FORMAT to header as per VCFv4.2 spec#2

Open
pcjentsch wants to merge 1 commit intoconnor-lab:mainfrom
pcjentsch:bugfix_format
Open

add FORMAT to header as per VCFv4.2 spec#2
pcjentsch wants to merge 1 commit intoconnor-lab:mainfrom
pcjentsch:bugfix_format

Conversation

@pcjentsch
Copy link

Since msa2vcf includes the sample name in the header, I think "FORMAT" needs to occur before it. This prevented files written by msa2vcf from being read by some VCF parsers.

Spec: https://samtools.github.io/hts-specs/VCFv4.2.pdf

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant