Example:

TAXIES_DB_DIR=./db
taxies genmark genome.fna $TAXIES_DB_DIR markers.fna -t 4
taxies gentoph markers.fna $TAXIES_DB_DIR tophits.txt -t 4
taxies gentax tophits.txt tax.txt

Docker image

DockerHub: https://hub.docker.com/r/compmetagen/taxies/

Download:

docker pull compmetagen/taxies

Build:

docker build docker/ -t taxies

Singularity image

SingularityHub: https://www.singularity-hub.org/collections/1963

Download:

singularity pull --name taxies.simg shub://compmetagen/taxies

Build:

singularity build taxies.img Singularity