feat: docstrings and overall design for expectation maximization iterative refinement#21

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jedyeo wants to merge 175 commits intomasterfrom

itr_ref_docstrings

Commits on Mar 21, 2022

Commits on Mar 23, 2022

Commits on Mar 24, 2022

Change class docstring
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Remove todo's breaking deepsource
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Format code with black and isort
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DeepSource changes
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deepsoruce changes
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Format code with black and isort
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literals removed
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literals removed
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add pre commit
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Init tests
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temporary static methods
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Format code with black and isort
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temporary static methods
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ds changes
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ds changes
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changed deepsource
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lint
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add black back
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Format code with black
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update toml
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ds
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added .ini for pytest
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init
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Codecov files
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Linting files
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Dev requirements
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Environment config
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Added setup.py
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env yaml
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Reformatted docstrings
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Testing workspace changes
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Fixed test docstrings
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Edited module name
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Linting fixes
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Format code with black
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Linting fixes
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Linting fixes
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Fixed imports
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Readded simSPI import
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Fixed function reference
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Fixed test_build_ctf_array
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tets
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Reworked tests to use consistent array sizing
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Tab snuck in
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Comment change to force checks
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Fixes to tests
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Refactored tests a bit
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Fix to test_split_array
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Fix to test_generate_xy_plane
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Docstring fix
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Deepsource tricked me
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Dosctring to force checks
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Fixture fix:
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Format code with black
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Forcing checks again...
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Format code with black
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Better ctf_info for tests
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Strings not variables...
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Merging
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Fix
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Fix
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test fixes
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Format code with black
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Test fixes
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Force checks
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Format code with black
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test fixes
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Forcing checks
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Reshape fix
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Shape fix
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Structure changes
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Test framework adjustment
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Import change
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Small typo fixes
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Added a slightly more comprehensive split test
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Added back references
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Commits on Mar 25, 2022

Commits on Mar 27, 2022

Removed superfluous imports
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Updated docstrings, fixed splitting arrs
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Split n into n_pix, n_particles
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Format code with black
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Added back numba
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Force checks
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Commits on Mar 28, 2022

n_pix in fft docstrings
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Normalizing half maps
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Format code with black
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Commits on Mar 31, 2022

Removed comments, refactored big method, fixed bayesian weights shapes
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Format code with black
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Infrastructure files
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Infrastructure files
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Missed a name
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Removed last few comments, will re-add if needed
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Format code with black
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Merging changes
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Fixed variable name
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Merge branch 'itr_ref_docstrings' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Changed codecov parameters
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Removed __init__.py files
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Revert "Removed __init__.py files"
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Merging
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Revert "Changed codecov parameters"
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Merge branch 'reconstructSPI_infrastructure' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Refactoring library format
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Directory fixes
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Revert "Refactoring library format"
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Revert "Directory fixes"
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Removed dependencies
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Testing something
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Merge branch 'reconstructSPI_infrastructure' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Testing things
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Merge branch 'reconstructSPI_infrastructure' of github.com:compSPI/reconstructSPI into itr_ref_docstrings
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Force checks
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Testing things
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Added library requirements
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Added dev branch to branches on which tests will run.
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Merging changes. Have temporarily added infrastructure branch to workflow
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removed itr_ref_docstrings branch checks
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