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Edit environment.yml + Add unit-tests for particle_metadata.ipynb #75

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Merged
ninamiolane merged 11 commits into from
Jun 14, 2022
Merged

Edit environment.yml + Add unit-tests for particle_metadata.ipynb #75

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f590042
Change environment
ninamiolane May 4, 2022
d82a93f
Correct import in particle metadata file + gitignore metadata.star
ninamiolane May 4, 2022
e3d1a12
Add unit-tests for notebooks on ioSPI
ninamiolane May 4, 2022
0d97049
Passed test for particle_metadata.ipynb
ninamiolane May 4, 2022
1f61711
Address DS doc error
ninamiolane May 4, 2022
3a4c56b
Add jupyter to envrinment.yml
ninamiolane May 4, 2022
b54b601
adapt version of h5py as an attempt to fix error in Test / build
ninamiolane May 9, 2022
7ce25bd
Merge branch nina-pdf.
bongjinkoo Jun 14, 2022
d07c11f
Change calling jupyter subprocess with shell=True.
bongjinkoo Jun 14, 2022
a7ab6a0
Change calling jupyter subprocess with run() instead of check_call().
bongjinkoo Jun 14, 2022
9513d5e
Remove unneeded comments.
bongjinkoo Jun 14, 2022
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3 changes: 3 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
@@ -1,3 +1,6 @@
# Files output by the notebooks
notebooks/data/metadata.star

# Files output by the tests
2dhb.*

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4 changes: 2 additions & 2 deletions environment.yml
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Expand Up @@ -9,16 +9,16 @@ dependencies:
- mrcfile
- numba
- numpy
- h5py>=2.10.0
- h5py>=3.6.0
- pandas
- pillow>=8.2.0
- pip
- pytest
- pytest-cov
- pytorch
- pyyaml
- osfclient
- pip :
- osfclient
- jupyter
- starfile

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