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Modernize, i.e., update to processors using Stanford CoreNLP 4.4.0 #772

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Modernize, i.e., update to processors using Stanford CoreNLP 4.4.0 #772

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ef9e531
Update processors dependency
kwalcock Jun 30, 2022
a36d144
Make it build
kwalcock Jun 30, 2022
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2 changes: 1 addition & 1 deletion main/src/main/scala/org/clulab/reach/darpa/HypothesisHandler.scala
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Expand Up @@ -78,7 +78,7 @@ object HypothesisHandler {
case event:BioEventMention =>

// Get the dependencies of the sentence
val dependencies = event.sentenceObj.dependencies.getOrElse(new DirectedGraph[String](Nil, Set[Int]()))
val dependencies = event.sentenceObj.dependencies.getOrElse(new DirectedGraph[String](Nil, None, Some(Set[Int]())))

val eventInterval:Seq[Int] = event.tokenInterval

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6 changes: 4 additions & 2 deletions main/src/main/scala/org/clulab/reach/indexer/PubmedAbstractIndexer.scala
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Expand Up @@ -88,8 +88,10 @@ class PubmedAbstractIndexer {
d.add(new StringField("published", meta.published, Field.Store.YES))
d.add(new TextField("journal", meta.name, Field.Store.YES))
d.add(new StringField("issn", meta.issn, Field.Store.YES))
d.add(new IntField("volume", meta.volume, Field.Store.YES))
d.add(new IntField("issue", meta.volume, Field.Store.YES))
d.add(new IntPoint("volume", meta.volume))
d.add(new StoredField("volume", meta.volume))
d.add(new IntPoint("issue", meta.issue))
d.add(new StoredField("issue", meta.issue))
}

writer.addDocument(d)
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4 changes: 2 additions & 2 deletions processors/build.sbt
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Expand Up @@ -5,14 +5,14 @@ resolvers += ("Artifactory" at "http://artifactory.cs.arizona.edu:8081/artifacto


libraryDependencies ++= {
val procVer = "8.3.3"
val procVer = "8.5.2-SNAPSHOT"

Seq(
"com.typesafe" % "config" % "1.3.1",

"org.clulab" %% "processors-main" % procVer,
"org.clulab" %% "processors-corenlp" % procVer,
"org.clulab" %% "processors-odin" % procVer,
// "org.clulab" %% "processors-odin" % procVer,

"ai.lum" %% "common" % "0.1.4",

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