Add tests

[arafune]

• Fix type in previous comit.
• add nbsphinx_allow_errors = True in conf.py for Sphinx
• fix(arpes): follow the recent deprecations in recent numpy
• docs(xarray_extensions.py): Removee trailing spaces in docstring
• feat(setup.py): Update dependecy
• refactor: isort
• refactor(core.py): isort is applied
• feat: update .gitignore
• fix(analysis/filters.py): follow the recent name space change
• refactor(analysis/filters.py): follow the new name space of scipy
• fix(.github/workflows/test.yml): add QT_QPA_PLATFORM: "offscreen"
• Update test.yml
• Apply black once again
• fix(endstations/init.py): add "from future import annotations"
• apply black once again
• black
• Fit the value in the test due to the K_INV_AA change
• To keep consistency with the standard ARPES measurements
• Use forked version of igorpy
• Use fork verision of igorpy
• Update test.yml
• try to increase the python version number
• Update setup.py
• fix(.github/workflow/test.yml): use full_report instead of path_to_write_report
• fix(qt): setPointSize, setFixedheifght, and window.resize require integer, not float
• remove
• fix(inches_to_px): returns int | Iterable[int]
• fix(qt_tool/init.py): follow the change of qt_info.inches_to_px
• feat: change README.rst a bit
• fix(qt/init.py): add future annotation to work with python 3.9
• try to follow Deprecating set-output in github workflow
• Another set-output is removed
• Preparation before big reform
• fix(config.py): add future annotations
• typing Callable -> collections.abc Callable
• Use numpy.typing.DTypeLike
• Update annotations
• Revision for "Correct" k-conversion
• style(conversion): add Caution for incorrect algorithm is used in determining kinetic energy for conversion of k
• fix(xarray_extensions.py): use property energy_notation in switch_energy_notation
• Big reform
• docs: update length
• docs: update length
• style(bounds_calculations.py,-kx_ky_conversion.py): remove a blanc line
• Update type annotation
• (feat:) NEW Literal type, K_AXIS, introduced
• Raise the required Python version
• typo filx
• Raise library version
• Raise library version
• use NDArray (generic versiono of np.ndarray)
• Required python version: py310
• Fix long line warning, as posssible
• fix(bz.py): Follow the recent (actually, not so recent) chenge
• Merge upstream
• Update pyproject.toml
• fix(plotting/bz.py): Fix bz plotting
• Prepare README.md (made by pandoc)
• typo fix in pyproject.toml
• update black version in .pre-commit-config.yaml
• refactor(core.py): rename variable "removed" to "momentum_incopatibles"
• feat(axis_preparation.py): new function: vstack_data
• Add typing annotations
• fix(axis_preparation.py): use overload in vstack_data
• fix(xarray_extensions.py): Go back to the original version to pass the test
• fix: Avoid dangerous default value
• feat(constants.py): introduce SPECTROMETER class (TypedDict)
• feat(xarray_extensions.py): add "assert isinstance(self._obj, (xr.DataArray, xr.Dataset))" to ensure self._obj is not None
• refactor(arpes/corrections/background.py:remove_incoherent_background): data is DataType. Not should be set at DataArray
• feat(pyproject.py): add scikit-image in dependencies
• refactor(apply_dataarray-in-xarray.py): arr should be DataType (Probably)
• refactor(corrections/fermi_edge_corrections.py): Add type hints more
• refactor(fits/utilities.py): add annotations
• refactor(xarray_extensions.py): Correct Type in isinstance(self._obj, ...)
• refactor: add type annotations
• fix(model/*.py): default value of independent_vars should be list. not a tuple. (As in lmfit)
• fix(fits/utilities.py): Remove the printf debugging line
• Update ipynb in doc a bit
• refactor: normalize_to_spectrum limits the type
• refactor: continued: normalize_to_spectrum
• refactor: add None. (This is a temporal treatment)
• refactor: Add None
• feat(typing.py): rename to _typing.py
• refactor: add type annotation
• refactor: add type annotation (+1 squashed commit) Squashed commits: [2164634] feat(pyproject.toml): update dev-dependencies
• fix(_typing.py): tyupo fix
• Update pyproject.toml
• feat(_typing.py): new Literal: ANGLE, EMISSION_ANGLE is introduced, and K_AXIS -> MOMENTUM
• refactor(pyproject.toml): introduce ruff ignore
• add annotation
• fix(pyproject.toml): add "PD011" to ignore
• refactor(pyproject.toml): add comment to the ignored rule
• refactor: apply ruff more
• test(test_momentum_conversion.py): use kp=np.linspace(... instead coord={"kp": np.linspace(...
• feat(derivative.py): preparation: maximum curvature method
• refactor(filters.py): use numpy.nan_to_num and remove nan_skip arg
• refactor(filters.py): add annotations
• refactor: apply ruff more, and fix a warning (no-explicit-stacklevel (B028))
• refactor: ruff more
• refactor(attrs.py): apply ruff more
• feat(filters.py): remove skip_nan from boxca_filter_arr function
• style: Add type annotation
• feat: Add TODO.md
• style(igor_utils.py): follow ruff warning
• style: add Change.md
• docs(TODO.md): update TODO
• feat(derivative.py): add new method curvature1d
• refactor(derivative.py): Use xr.differentiate
• feat(derivative.py): add curvature2d that is consistent with my igor procedure
• fix(provenance.py): fix a bug
• fix(test_derivative_analysis.py): floow the refactoring function of dn_along_axis
• refactor: apply ruff more
• refactor(derivative): cuvature is now just a thin wrapper of curvature2d
• fix(derivative.py): minimum_gradient works. (But it might break the compatibility with the previous.)
• refactor: Apply ruff --fix . except example_data.py
• refactor: apply ruff --fix . more
• refactor: Add hint annotation
• refactor(xarray_extensions.py): remove S.nan_to_num because fillna() method is available
• style: apply ruff more
• style(igor_plugin.py): use ClassVar
• refactor: add annotation
• refactor: apply ruff . --fix (0.0.275)
• style: ClassVar is introduced (Not all)
• fix(load_pxt.py): strict should be False
• *** refactor: Apply ruff more**
• refactor: Follow the some ruff warning
• feat(arpes/xarray_extensions.py): Change the way how to judge if the DataArray is spectrum data or not in S.spectra property
• style(endstations): prodigy_itx.py & SPD_main.py are added
• test: test script/data for prodigy_itx.py
• docs(Changes.md): update
• fix(prodigy_itx.py): Fix checking single frame
• feat(SPD_main.py): Accept the itx file contains many waves (Many 2D ARPES data)
• refactor(prodigy_itx.py): Add helper function
• fix: add notations
• refactor: Add more annotation
• *** Add/modify the Type hint in plotting**
• type name change, and add type more
• type name change, and add type more
• refactor: Add type test more
• refactor: Add type hints more
• **refactor(stack_plot.py): - Drop linewidth/s args, kwargs is enough - Drop transpose argument. If swap axis is needed, should change the data
• docs(statistics.py,-stack_plot.py): add document in assert
• **refactor(tof.py): drop fmt, kwargs is enough
• - feat(stack_plot.py): Add new mode "hide_line" and "fill_between"
• Update documents
• feat(xarray_extensions.py): swap_angle_unit
• fix(core.py): typo fix
• test(xarray_extensions.py): add test for S.swap_angle_unit
• feat(xarray_extensions.py): swap_angle_unit
• feat(core.py): check the angle unit before convert
• feat(xarray_extensions.py): is_slit_vertical uses the angle_unit for judge
• update pyproject.toml For windows
• refactor: Apply ruff more
• fix(stack_plot.py): Treat correctly when nan vallue is inclueded
• refactor: Add type hint more
• refactor: Add type hint more
• refactor(stack_plot.py): improve color set
• refactor(stack_plot.py): Add colorbar to flat_stack_plot
• refactor(stack_plot.py): Drop original version of flat_stack_plot
• perf(stack_plot.py): improve _scaling_factor function
• refactor(statck_plot.py): add type hint more
• refactor(statck_plot.py): add type hint more
• docs(analysis/general.py): very minor update of rebin
• refactor(general.py): rebin uses xarray.groupby_bins
• refactor(general.py): Drop oldversion rebin (named as rebin_old)
• feat: Raise the version number to 3.1.0daredevil, because the current version is largely different from the original. The most differences are due to the library dependency. (Newer library is required.)
• fix(stack_plot.py): follow the rebin change
• refactor: Add type hints
• refactor: add type hints
• refactor: Add type hint
• feat: kwargs.get -> kwargs.pop
• refactor: Add type more
• refactor: Add type hints more
• refactor: Add type hint more
• refactor(derivative.py): remove unused fillna
• refactor: add type hints
• refactor: Add type hint a bit
• docs(README.rst): Add black label
• Update README.rst
• time zone set at UTC
• refactor: Add type hints
• refactor: Add more type hints
• refactor(Apply-ruff---fix): ruff version 0.280
• refactor: Add type hints more
• refactor: Add type hints more
• refactor(_typing.py): Stop using Union
• refactor: remove nested if
• feat(xarray_extensions.py): update switch_energy_notation
• refactor: Apply ruff and add type hints
• refactor: Apply ruff and add type hints
• refactor: Apply ruff and add type hints
• feat: Add files
• feat(montage.py): Add resource files to test montage
• refactor(xarray_extensions.py,-fermi_edge.py,-stack_plot.py): Remove unused kwargs
• refactor: Remove unused kwargs
• refactor(fit_models/): Not use mutable data "list" for argument defaults
• feat(fit_models): follow the lmfit after 0.9
• refactor: Fix some warning by ruff * shorten the long lines * Add colon after "TODO"
• docs(test_curve_fitting): add docstring
• refactor(fits/fit_models): add type hints more
• refactor: Add type hints more
• Add type hints more
• Add type hints more.
• feat(xarray_extensions.py): follow spectrum_type judge with endstation/init.py
• refactor(xarray_extensions.py): Energy_Notation -> EnergyNotation
• Add tests more.
• Add tests more.
• fix typo
• Add test more
• refactor: add type hints more
• refactor: Add type hints more
• test(test_xarray_extensions.py): move test_experimental_conditions and test_location_and_station
• feat(xarray_extensions.py): two method about angle correction are added.
• test: Replace resource file for test
• feat(prodigy_itx.py): Fix problem in parsing User comment
• feat(xarray_extensions.py): algorithm of beta (theta) angle correction is fixed
• test: Replace resource files for test
• refactor(utilities/, endstations/plugin, xarray_extensions): Add type hints more
• refactor(config.py, utilities/, endstations/plugin, xarray_extensions): Add type hints more.
• refactor: Add type hints more
• feat(xarray_extensions.py): When corrected by angle beta / theta, the coresponding coords is set at 0 after correction
• feat(SPD_main.py): update RENMAE_KEY
• feat(combine.py): New file (and function) is added
• feat(combine.py): Add occupation_ratio argument
• typo fix
• fix(combine.py/concat_along_phi): method arg cannot be used for sel with slice in xarray.sel
• Fix typo
• style: Typo fix
• ➗ refactor(:up:): update
• ➗ refactor: Add new TypedDict(CONFIGTYPE)
• ➗ refactor: add TypedDict for xarray.attrs and type hints more
• ➗ refactor: add type hints more
• 🧼 correction: add type for attrs
• 🧼 correction: update TypedDict classes
• Add TypedDict
• 🧼 correction: add Incomplete type hint
• 🧼 correction: add Incomplete type hints for some kwargs & args
• 🧼 correction(fit_models): add type hints and stop using wildcard in fit_models/init.py
• 🧼 correction: add type hints more
• 🧼 correction: add type hints more
• 🧼 correction(📜 io.py): update doc and add type hints
• 🧼 correction(📜 typing): add type hints more
• 🧼 correction(📜 type hints): add hints more
• 📜 update hints
• 📜 type hints
• ➗ refactor(📜 type hints): update
• 🧼 correction(📜 Changes.md): revise a bit
• 🧼 correction(📜 type hint): add hints more
• 🚧 add type hints
• 📝 Update Changes.md
• add type hints
• add ConfigSetting TypedDict
• apply ConfigSetting
• just add MPLPlotKwargs, but not used
• import functions in plotting explicitly
• number of ruff errors is 2934
• 🔨 add type hints
• 🔨 add type annotation
• 🔨 revise type hint
• 🔨 add and revise type hints 🔨 remove all.py 💬 add type of kwargs for matplotlib (plot, pcolormesh)
• 💬 add & revise type hints
• 🔨 stop using cm.get_cmap function because it is deprecated. 💬 update type hints
• ✨ add logger
• 🔥 remvoe explicit args because they are just passed to matplotlib functions
• 💬 update type hints
• 👌 Remove unused args and kwags in kspace_to_ * Excepting kspace_to_BE(args)
• 💬 update type annotation
• 🐛 fix bug in find_spectrum_angular_edge 🎨 reducing the arguments in imshow_arr 🎨 reduce number of kwargs that are for just passing. 💥 removing G.extent
• 🚑 revert MBS endstation, which is not used but for keeping consistency....
• 🔨 reduce the number of args in plot_movie
• 🔨 short change
• 💬 update type hints
• 💬 add from future import annotations
• 🐛 fix bug in jupyter.py
• 🔥 remove soft_normalized_dim
• 🔨 import modules explicitly
• 🚧 remove unused x
• 🔨 remove unused variable x from guess function
• 💬 update type hint
• ✨ use logger in traceable
• ✨ Refactoring
• Now works on windows
• 💬 update type annotation
• 💬 update type hints
• 💬 update type hints
• 💬 update type hints
• 💬 upadte type hints
• 💬 update type hints
• Breaking changes:
• 🐛 probably fix a bug
• 🚨 correct typo in docs 💬 update type hints
• 💬 update type hints
• 💬 update type hints
• 👽 follow the IPython change about get_ipython
• 💬 upadte type hints
• 💬 update type hints
• 🐛 typo fix
• It works Windows, too.
• use relative path in "from"
• use relative path in "from"
• update plotting/init.py
• Merge branch 'daredevil' of https://github.com/arafune/arpes into daredevil
• 🔨 use relative path
• 🔨 update pyproject (rye run pytest works, eventually)
• 💬 update type hints
• 🔥 fix wrong assert
• 📝 update documents (replace π with pi)
• 🔥 fix bug 🔥 Replace image in curve-fitting.ipynb
• 🔨 minor refactoring
• 🐛 typo fix
• ✨ bz_tool returns Axes
• 📝 revise ipynbs
• 💬 apply ruff, with a bug fix
• 💬 update type hints
• 💬 update type hints 🔧 update pyproject.toml
• 💬 typo fix
• 💬 upate type hints
• 💬 update type hints
• 💬 update type hints
• 💬 update type hints
• 💬 update type hints
• 📝 add SPD_main to api.rst
• 📝 update docstring
• 🔧 update pyproject.toml
• 🔨 Separate np.nan from NONE
• 💬 update type hints 📝 update docstring
• 🔥 fix error in repr_html 💬 udpate type hints
• 🔨 update _SEARCH_PATTERN for itx file generated by Prodigy
• 💬 update type annotation
• 🔨 update type hints
• 💬 update type hints
• 💬 update type hints
• 🔨 update PRETTY_KEYS definition
• 💬 update type hints
• 💬 update type hints
• 🐛 fix bug in xarray_extensions occuring when temperature is not numeric, such as "RT", "LT".
• 💬 update type hints
• 🔨 Remove try-except-pass pattern
• 🔨 Refactoring "select_around_data" and "select_around"
• 🚧 test for G.stride and G.range
• 💬 update type hints
• 🔨 add unit test for select_around
• 🔨 add helper function: _radius
• 🔨 Add a helper function for select_around_data to refactor it
• 🔨 A refactoriing 💬 update type hints
• 💬 update type hints
• 📝 typo fix
• 📄 attrs["grating"] = "HEG" is set in merlin.py not xarray_extensions.py
• 🔥 remove ALG-MC specific from xarray_extensions.py
• 💬 Update type hint
• 💬 add type hints
• 🔥 remove function: propagate_statistical_error & derivative
• 💬 update type hints
• add suppress_warnings in conf.py
• 🔨
• ✨ add test for bz.py
• ✨ add helper function.
• 🎨 Add type annotation and fix typos. * just renaming object * Remove needless global statement.
• 🚨 add type hints
• ✅ test for bz_spec 🚨 Add type hints
• 🚨 Add helper function to reduce ruff error.
• 💄 Dont use "dir" that is built-in.
• 💄 Reduing the number of args by using tuple.
• 💄 provide chunk related calculation helper function for brevity.
• 🚨 Fix some ruff error
• 💬 Add docstring template by Doge
• 💬 Update docstring and insert docstring template
• ♿️ "import arpes.xarray_extension" problem.
• 🎨 Use relative import from siblings
• 💬 Update docstirng and adding it's template
• 💬 Add doctring templates
• 🔨 Use pathlib (and fix minor typo)
• 🔨
• 💬 Revise type hints
• 🔨 For remobing bz related codes (Use ASE)
• Add the support for arpes lab in the IF UMCS, Lublin, Poland (Finish work on SToF loader including the appropriate subpixel T->E transform #1)
• 🔨
• 💬 Update type hints
• 💬 Update type hints
• 💡 Just apply black (No essential change)
• 💥 move to ALG_main because it is not useful for all
• 💬 update type hints and others.
• 🔨 fix some ruff error/warning
• 🔥 Remove methods from xarray_extensions.py * Pandas related method, and methods which uses it. * orignal_parent_scan_name, scan_row, df_index, df_after, df_until_type * referenced_scans * Bokeh related methods. * show_d2, show_band_tool, fetch_ref_attrs
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• Refactoring and introduce some braking changes.
• 🎨
• 🔥 Remove Bokeh related modules.
• ⚡️ G.shift_by: Accept np.ndarray as other
• 💬 Update type hints
• 💬 Update type hints
• 📝 Update ipynb to follow the G.shift_by
• 🎨 use deg2rad
• 🎨 plotting.bz set BZ drawing color is black
• 💬 Update type hints
• 💬 Update type hints: Remove ExperimentalConditions
• ✏️
• 💬 Update type hints
• 💬 Update type hints
• 🔥 Stop using trace.
• 💬 Update type annotation
• 💬 Update type hints (Use TypedDict)
• 💬 Update type hints
• 💬 Update type hints
• Support for Phoibos xy files (Draft v3 #3)
• 💬 Update type hints
• 🎨 Apply ruff --fix.
• 💬 Update type hints and minor fixes.
• 🎨
• 💬 Update type hints
• 🔨 Update fits related modules.
• 🎨 New TypedDict: PROVENANCE
• 🎨 Dict expand is not needed.
• 🔥 Remove PARENTPROVENANCE
• 🎨 Update PROVENANCE TypedDict
• 💬 Update type hints
• ⏪ Revert lmfit.plot
• 🎨 Revise dict_to_params (with rename)
• 🔥 Remove MappableDict, which does not seem to be useful.
• 💬 Update type hints
• 🎨 dwelltime -> dwell_time
• 💬 update type hints
• 🔥 Remove original_id in xarray_extensiosn.py
• 💬 Update documents: NEED fillna(0) for fitting.
• 💬 Update type hints
• 💬 Update type hints & add test for "F".
• 💥 [()/?] changes to "_" in cleankey
• 🎨 hack plotting/spatial.py
• 💬 Update type hints
• 🔥 Remove lmfit_plot. No reason for keeping to maintain this module.
• 🎨 just a refactoring
• 💬 Update type hints
• 🎨 switch_energy_notation should not work for the photon energy dependence data
• 🎨 repr_html works with hv_map*
• 🎨 Works better with hv_map
• 💬 Update type hints
• 💬 Update type hints
• 🔥 Remove condenced_attrs property.
• 💬 Update type hints
• 🔨 Update tests
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🐛
• 💬 Fix pyproject.toml & Update type hints
• 💬 Update type hints
• 💬 Update type hints & Refactoring subclass of XModelMin
• 💬 Use dict directly.
• 🎨 Be slim: introduce a helper function
• 🎨 Update type hints
• 🎨 Be slim. Don't use dict([[a,b]]), instead use just {a:b}.
• 🎨 Be slim. Don't use dict([[a,b]]), instead use just {a:b}.
• 💬 Update type hints
• 🔀
• 💬 Update type hints.
• 💬 UPdate type hints and be slim.
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🔥 Remove trace arg and related file.
• 🔥 Remove "group_by" function, which is same as more_itertools.ichuncked
• 🎨 Be slim. Not use dict([[]]) to make the dict of single pair.
• 💬 Update type hints: Introduce XrTypes as xr.DataArray | xr.Dataset
• 💬 Update type hints
• 🔥 Remove as_3d in utility/bz.py
• 🎨
• ⏪ Revert convert_for
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type annotation
• 💬 Update type hints
• 🔥 Be slim: S.symmetry_points just refers attrs.
• 🎨 Bump up the version to 4.0.0.beta1
• 💬 Update documentation.
• *** Tidy up**
• Add new prodigy xy file in example_data (Igor package installation fail? #5)
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🔥 file in laue goes to legacy_files.
• 🎨 Apply black.
• 🎨 Apply black to files in scripts.
• 🎨 Exclude unmaintained endstations from mypy ruff check.
• 🎨 Update type hints
• 🎨 Update
• 🎨
• ➕ change dependency: jupyter_server (notebookbbb is dropped.) 🎨 update type
• 💬 Update type
• 🎨 add function: make_psf
• 🎨 remove "import os" as possible.
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update readthedocs related.
• 💬 Try for the readthedoc.
• 💬 Typo (?) fix
• 💬 Update requirements.txt
• 💬 Use requirement.txt generated by rye.
• 💬 readthedoc doesntwork....
• 🎨
• 🎨
• 💡 Update docs
• 🎨
• 💬 Fix worng link in document.
• 💡 Update link.
• 💬 Try to use pydata_sphinx_theme
• 🎨
• 🎨
• 🎨
• 🎨
• 🎨 Apply ruff
• 🎨
• 💬 update link
• 🎨 update links
• 💬 Apply black to notebooks
• 🔥 Remove it.
• 💡 Try to use pydata_theme (Once again)
• 💬 I have forgotten to add pydata-sphinx-theme in requirements / pyproject.toml.
• 💬 Update readthedoc link
• 💡 Update documents
• ⬆️ Python version should be 3.11 or above.
• 💬 Update ruff setting
• 💬 Update type hints
• 💬 Update document
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💡 Update documentation
• # This is a combination of 2 commits. # This is the 1st commit message:
• 💬 update type hints
• 💡 Update link in README.rst
• 🎨
• 📝 Update documents
• 🚨
• 🔨 x, y, z is ensure coords
• 🚨 Avoid PERF203.
• ✏️
• 💬 Update type hints
• 💬 Use CapWords for class name used TypedDict, such as ScanDesc, Provenance, SampleInfo, etc.
• 💬 Update Type hints
• 💬 Update type hints
• 🐛 pyarpes should work on IPython
• 💬 Use CapWards for class
• 💬 Update type hints
• 🐛 Fix bug in jupyter.py
• 💬 Update type hints
• 💄 Remove F403 (not all)
• 💬 Update type hints
• 🐛 Fix bug in _repr_html
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• ✨ Add new function to tarpes.py, which has been used very personally.
• 💬 Update type hints
• 💬 Update type hints
• 🔥 Use ruff for formatting.
• 🚨 Remove ruff warnings: * BLE001 * ANN001 by setting "Imcomplete" (This is really ad-hoc, but ...)
• 💬 Update type hints
• 💬 Update type hints
• 💬 Add Incomplete to type unknown args.
• 💬 Update type hints
• 💬 Change target python version.
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🚨 Introduce helper function.
• 🚨 Remove ruff Warning in xarray_extensions.py - PLW2901 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• ✅
• 💬 update type hints
• 💬 Update type hints
• 💡 Update documents a bit, and type hints
• 💡
• 💬 Update type hints
• 🚨
• ✅
• 💬 Update type hints
• 💬 Update type hints
• 🎉
• 🔨
• [Major Upgrade] Rewrite the plugin for increased flexibility
• [Major upgrade] Process the dimensions provided by prodigy_xy plugin.
• [feature] Add a new end station plugin: Phelix.
• Add docstrings and apply ruff --fix.
• Use accurate values in LENS_MAPPING.
• Use accurate values in LENS_MAPPING.
• Do not use LENS_MAPPING for dimension scaling.
• Add region as id and missing default theta value.
• Update type hints
• 🔥 Remove bz_plot: Use ASE's one.
• 🔥 Remove unused import & description about the extension about bz_plot, which has been removed.
• 🔥 Remove hex_cell_2d, hex_cell, as_2d in bz.py
• 🔥 Remove unnecessary functions by using ASE Cell object
• 🍱 Use Cell
• 🚧 Preparation for adding Rotaion in bz_plot
• 💬 Update type hints
• 🔨 use array propery of Cell object
• 💬 update type hints
• 💬 Update type hints
• 🔥 Remove test/test_bz.py: empty
• 🔥 Delete functions in plotting/bz.py utilities/bz.py
• fix unused import
• 🔨 Refactoring: process_kpath
• 🐛 Add import
• 🔥 Remove unused SpecialPoint
• ✅ Ignore repr. from coverage test*
• 💬 Update type hints
• 💬 Update type hints
• Add integrated_intensisty property to ProdixyXY class
• Postpone the energy and angle conversion.
• Convert kinetic energy to binding energy.
• Use clean_keys function.
• Provide test script for prodigy_xy.
• 🚨 Remove some mypy errors 💬 Update type hints
• Apply ruff format
• 🐛 Fix the problem in test for full_coords_keys
• 💬 Update type hints
• 💬 Add comment in igor_utils.py
• 💬 Update type hints
• 💬 update type hints
• 🔨 Refactoring about Enum related. 🔥 Remove not-required Enum related codes
• 💬 Update type hints
• 💬 Update type hints
• 💬 Remove Remove unused functions
• 💬 update type hints
• 🔨 Refactoring a bit.
• 💬 polarization_colorbar is just a helper function as _polarization_colorbar
• 💬 Update type hints
• 🔥 Remove shift_gamma from slice_along_path
• 🔨 Refactoring a bit to reduce complexity.
• 🐛 Fix bugs
• 🔨 Move to it as the helper function.
• 🔨 Refactoring a bit to reduce the number of statements/complexity.
• 🔧 Raise required lmfit version.
• 🔨 Refactoring a bit (move it as the helper function)
• 🔨 Refactoring a bit to reduce the number of lines.
• 🔨 Just a refactoring
• 💬 update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🔥 Remove them because it has not been used and use "from string import ascii_uppercase" if needed.
• 💬 Update type hints
• 🔧 Update pyproject.toml
• 🚨 Just ignore (Might be reverted in the future)
• 🔨 Refactoring to reducde complexity.
• 🔨 Just a tiny refactoring to reduce complexity.
• 💬 Update type hints and doc strings
• 💬 Update test
• 💬 Update type hints
• 🔨 Just tiny refactoring
• 🔨 Refactoring
• 🔨 Refactoring find_spectrum_angular_edges
• 🔨 Tiny refactoring
• 💡 update documentation a bit.
• 💡 Update doc
• 💡 Update Changes.md
• 🔨 Follow the very recent ASE (after fd3e7cb8)
• 💬 Update type hints
• 🔨 A tiny refactoring
• 💬 Update type hints
• 💬 Update type hints
• 💬 update type hints
• 🐛
• 💬 Update type hints
• 🔨
• Refactoring:
• 💬 Update doc for fit models
• 💬 update type hints
• 💥 Remove a value/variable/constatns effective only for a specific group.
• 💬 Update type hints
• 🔥 Remove plot_fit
• 💬 Update type hints
• 💬 Update type hints
• 🐛 Fix a bug in stack_plot.py
• Minor upgrade of the prodixy_xy (Import error in BZ plotting example #7)
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🔥 Remove unused helper function.
• 🔥 Remove _display_label in property of Band
• 💬 Update type hints
• 💬 Add doc string
• 🔧 Update pyproject.toml
• 💬 update type hints
• 💡 Just a memo
• 💬 Add TypedDict
• 🚚 enumerate_dataarray moves to utility.xarray
• 💬 Add helper function to redudce complexity.
• 💬 update type hints
• 💬 Update type hints
• 🔨 Just a tiny refactoring
• 🐛 Rewrite iter_own_symmetry_points
• 🎨 Just tiny refactoring, not touching the algorithm. testing green.
• 🔥 Preparation a deep refactoring of band_analyais.py
• 🎨 Tiny refactoring and fixing bug
• ✅ updating test_curve_fit.py
• 🎨 Add comment
• 🎨 Sort the methods in G class.
• 💬 Update type hints
• 🎨 residual should not be copied from data.
• 🔥 Remove (move to legacy_files) peaks.py
• 🔥 Remove about imoprting peaks.py
• 🔨 Refactoring: Devide method in "G" into three classes.
• 🔧 Just refactoring
• 🎨 Reorganize class ARPESAccessorBase
• 💬 Update notebook documents
• 🎨 Use S.with_values
• 🔨 Refactoring swap_angle_unit
• 🎨 Update energy_notation method
• 🎨 Rearrange the methods
• 🔧 Update pyproject to include more_itertools
• ✅ increase torelance in test_curve_fit
• 🎨
• 🎨
• 💬 Add TypeGuard
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hint
• 💬 update type hitns
• 🎨
• 🎨 Update onverplot_the_bz
• 🔧
• 🔧
• 🔧
• 🔥
• 🎨
• 🎨
• 💡 Update docstring
• 💬 update type hints
• 🎨 Try&Error for readthedocs
• 🚚 Separate the check function in init.py to check.py
• 🚚 Move load_data into make_reference_plot
• 💬
• ✅ Add tool.pytest in pyproject.toml
• 🔥 Rename test_ in scripts with try_**
• remove def init from some classes
• 🎨 Fix bug in switch_energy_notatino
• 🔨 Add new class ARPESDataArrayAccessorBase
• 🔨 move region_sel to ARPESDataArrayAccessorBase
• 🎨 Simplify degrees_of_freedom
• 💡 Update Change.md
• 💡 Update ipynb
• 🎨 Move is_subtracted to ARPESDataArrayAccessorBase
• 💡 Update doc
• 🎨 Rearrange the methods in xarray_extensions.py
• 💬 Update type hints
• 🎨 Add category in warning.warn
• 💬 Fix wrong type. get_coordintes can return like {"delay": np.array([-1, -2, 0, 1, 2.]) 💬 Update type hitns
• 🎨 Add encoding arg to Path.open
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update docments
• 🔥 remove clean_attribute_names, clean_datavar_attribute_names because they are not used.
• 💬 update type hints
• 💬 Update type hints
• 💬 update type hints
• 🎨 Add TypeGuard
• 💬 update type hints
• 💬 Update type hints
• 💬 update type hints
• 💬 Update type hints
• 💬 Update type hints
• 🔨 Just a tiny refactoring
• 💬
• 🔥 Remove it, which does not seem to be so useful.
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 update type hints
• 💬 Add "PendingDeprecatedWarning"
• 💬 Update type hints & add widget.py to the list for mypy ignore
• 💬 Update type hints
• 💬 tryp to make XCompoisteModelMixin
• 🐛 (Fix)
• 🔧 Update required ase version.
• 💬 (chroe): update type hints
• ✅ add test_G_shift
• ✅ Update conftest.py
• ✅ Add test for conversion/forward.py
• Apply ruff --fix
• 🐛 Typo fix
• 🚨 Remove a mypy warning
• ✅ Add test
• 🔥 Remove fits/zones.py (Not used)
• 💬 Update type hits
• 💬 Update type hints around broadcast_model
• 🔨 Stop using xarray.enumerate_dataarray.
• 💡 Update docs.
• 🔨 G.iter_coords is simpler.
• 💬 While I'm not 100% sure about the difference of "Iterator" and "Generator", some of them must be Iterator.
• 💡 Update docstrings
• 💡 latexpdf works well
• ✏️
• 💬 Update type hints
• ⬆️ ase dependency
• ✅ Test for G.shift_by
• ✅ Add test for F.bands
• 🚨 Add TypeGuard
• ✅ Test for parse_model
• 💡 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💡 Update docstring
• 💬 Update doc
• 🎨 Renname IF_UCMS to IF_UCMSEndstation for consistency
• 🎨 Raise the version to 4.0 beta2.
• 💡 Update documentation.
• 🔨 Rename tarpes.find_t0, as the definition of t=0 is not always true.
• 💬 Update type hints
• 💡 Update type hints
• 💬 Update type hints
• 💡 Update docs
• 💡 Update docs
• 💡 Update docs.
• 💡 Update docs
• 💬 Update type hints
• 🔨 rename template -> results
• 💬 Update type hints
• 💬 Update type hints / docs
• 💥 arg name change with_attrs -> keep_attrs
• 💬 Update type hints
• 🔥 lmfit_html_repr is removed (move to legacy_files), because of unneeded.
• 💬 Update type hints
• 🔥 Remove normalize_to_dataset because of unneeded
• 🎨
• 🔥 Remove ParametersArgsFull
• 💬 Update type hints
• 💬 Update type hints
• 💬 Update type hints
• 💬
• 💬 Update type hints
• 💬 Update type hitns
• 🐛
• 💬 Update type hints
• 💬 Update type hints
• 💥 Change provenance in Dataset by broadcast_model.
• 💬 Update docs
• 💥 with_values method in "F" moves to "G".
• 💬 Update type hints
• 💥 S.with_values -> G.with_values
• 🎨 Revise the helper function a bit.
• 💬 Update doc string
• 💡 Update docs
• 💡 Update docs
• 🎨 Revise the helper function a bit.
• 💡 Update docs
• 🎨 Update inherit relationship in ARPESProperty
• 🎨 Rename variable / method
• 💬 Update type hints
• 🎨 Hack unpack_band_from_fit.
• 🎨 with statement is recommended in using nditer
• 💬 Update type hints
• 💡 Update docs
• 🔥 .F.bands will be deprecated.
• 💬 Update type hints
• 🎨 Try to remove ruff warning. Now, eventually, the codes are rurr-free.
• 💥 Parameter name of AffinneBroadenedFD: fd_center -> center, fd_width -> width
• 💬 Update type hints.
• 🎨 Revise _modelresults_to_array
• 💡 Update doc
• 💬 Revise docs (and considering refactor of the select_around_dta)
• 🎨 Revise fat_sel a bit.
• 🔥 Remove S.fermi_surface, S.generic_fermi_surface
• 🔥 Remove S.along that is the syntax sugar of slice_along_path
• 🔥 Add DeprecatedWarning to plot_plane_bz, and process_kpath
• 🎨 Update derivative1d and add test for it.
• 🎨 Change argument name in curvature2d directions -> dims to keep consistency.
• 🎨 Store attrs in derivative analyis results.
• ✅ Add test for G.enumerate_iter_coords
• 🎨 G.shift_coords, G.scale_coords, and G.transform_coords is xr.Dataset method.
• ♿️ Improving the code readability
• 🎨 Remove verbose variable
• 🔨 Use simple enumerate instead of np.nditer
• 🚨
• 🔨 Improve the readability
• 💬 Update type hints
• 🔥 Remove description about iterate_axis which will be removed.
• 🔥 Remove iterate_axis related methods but not iterate_axis itself
• 📝 Add about removal of G.iterate_axis
• 🚨 Apply ruff to fix NPY201 error.
• ✨ Preparation for removing xr.Dataset.F (all method should be only in xr.DataArray.F)
• 🔥 Remove most methods in xr.Dataset.F
• 💬 Update type hints
• 🔥 Remove polarization_plot
• 💬 Update type hints
• 💬 Update type hints
• 🔧 Tidiy up pyproject.toml a bit
• 💬 Update type hints
• 💬 update type hints
• 💬 Update type hints
• 💬 Update type hints
• Specify by kwargs
• 💬 Update type hints
• Fix ruff warning.
• ✅ Add test for stack_plot
• 🔨 Just a very tiny refactoring
• ✅ Add test for stack_plot
• ✨ Add reverse arg to G.iter_coords
• 🎨 Use G.iter_coords(reverse=True)
• just a tiny refactoring.
• ⚡️ Re-implement plot_dos, plot_xps_spectrum and savitzky_golay functions.
• ⚡️ Enable log plot
• 🚨 These files have been ruff free.
• 🔥 Remove no_ticks function which is just a reallly tiny wrapper
• ➕ Add titlecase to the dependencies
• 🔥 Remove the functions that I don't think it's useful.
• ✅ Add test for xps.py
• 💬 Update type hints
• 💬 Update type hints
• 🔧 Update pyproject.toml
• 🎨 the values in test are changed: To pass the test, require scipy>=1.14. (In order to work pyarpes…
• ⚡️ prodigy_itx accepts 4D itx data.
• 🚨 some import lines move to top
• 🚨 Apply ruff check src --fix
• 🔨 A tiny refactoring
• 🐛 Avoid circularly importing...
• ⚡️ Record the file in the provenance
• Update type hints
• 🚨 'import' moves to top region
• 💬 Update type hints
• 💬 update type hints
• 🐛 Fix bug in _parse_itx_head
• 💬 Update type hints
• 🚨
• Drop G.to_unit_range
• 🚚 Gathering the qt-based library into qt directory
• fix ruff warning
• ✨ new function: make_overview
• 🎨 Modify format a bit.
• 💡 Update type hints
• ✨ Use holoview (it would be better way than direct use of bokeh.)
• 💬 update crosshair_view
• 💡 Add docs
• 🚑 Fix in crosshair_view
• 🍻 Update parabolic band but not not fixed yet.
• 🐛 Fix bug to show the kspace data.
• Update formatting.
• 🐛 Fix bug in x- and y- label
• ✅ Add test for crosshair_view
• 🎨 DATA_PATH moves to init.py
• 🎨
• 🎨
• 🎨 CONFIG moves to init.py and pytest passes
• 🔥 Remove unneeded "import xarray_extension"
• 🔥 Remove .S from files in endstations/
• 💬 Remove unused args
• 🎨 Just update the code following ruff suggestion.
• ✨ Add a new_property parent_id
• ✨ Use parent_id
• 💡 Add memo for toward version 5.0
• 💬 Update sort of import
• 🎨
• 🚨
• ✨ New feature fit_inspection by using holoview
• Rename crosshair_view -> profile_view
• Show residual
• Update profile view (font size change)
• Update api.rst
• 🎨
• 🎉 Release 4.0
• Correct release date in CHANGELOG.rst
• 🚨
• ✨ Add horizontal Zero line (Initial work on slimming down installations #10)
• rename corrections -> correction (Update Read the Docs configuration (automatic) #11)
• update Changelog
• Fix type in make overview (Qt6 #12)
• Tune concate along phi (Calculate kp bounds #13)
• Update docs
• Update type hints
• 💡 Update CHANGELOG.rst
• Bump up version arpes itself in pyproject.toml to 4.0.0
• Fix problem in holoview #6327 (Update ANTARES data loader #14)
• ⚡️ Use hv.Image and add use_quadmesh arg to switch hv.QuadMesh
• Create python-app.yml
• Update python-app.yml
• Use rye in github action.
• Update python-app.yml
• update github action
• Update github action.
• Update github action.
• use setup-rye
• Move qt to legacy (show_band_tool() error #15)
• 💬 Update docs
• 🔥 Remove many of things about conda-related. (Fix type in previous comit. #16)
• ⬆️ Add version number for hvplot (Wrong Boltzmann constant #17)
• add apt -y install libhdf5-dev
• ♿️
• 🐛
• 🐛
• 🎨
• Remove test.yml workflow.
• name rye test
• Change dependency a bit for working on Ubuntu.
• remove unused noqa tag.
• ⏪ Reverting: dataset.S.apply_offsets(data.S.offsets) example_data is the limited use.
• To make GitHub Actions work (Fix error in BZ plot due to the recent version of ASE #20)
• Add codedev to GitHub action (fix(model/*.py): default value of independent_vars should be list, not tuple #21)
• 🎉 Bump up the version 4.0.1
• 🔥 Remove publish.yml (Few files are missing  #23)
• 💡 Remove unused tag. (qt_ktool could use variable energy slicing #22)
• 🔥 Remove .X. (Toward 5.0 #24)
• 🚨 Apply ruff check --fix (Update documents #25)
• Minor improvements in IF_UMCS and Phelix (Follow recent xarray #27)
• Update readme (Implement installation through pyproject.toml in a src layout #28)
• Remove X related API ref. (Tarpes update (Add pump probe delay value above the figure) #29)
• Make docs (Refactor shift by #30)
• fix: add phi-psi case in _is_dims_match_coordinate_convert (Tidy up #33)
• Use allclose instead of almost_equal (#34)
• Update documents (Offer to Take Over Maintenance of pyarpes #31)
• Update type hints (#35)
• Fix ruff error (preview mode) that can be easily fixed. (#37)
• Add docs about maximum curvature. (#38)
• Update docs (#39)
• add python-type-stubs from microsoft (#40)
• Remove DOCS_BUILD global variable (#41)
• Update .gitattributes to use nbstripout. (#42)
• Add the support for URANOS @ Solaris beamline (#43)
• Check has loaded (broadcast_model concatenation error #18)
• Follow the recent xarary (xarray: #8487) (#46)
• Excepting HTTPError when Notebook information cannot be read (#49)
• 🚧 Use uv instead of rye. (#50)
• Update arpes config (#51)
• 🎉 Bump up the version number to 4.1.0. (#48)
• 🚨 Fix ruff error (PLC0206) (#52)
• Update required ruff version (#53)
• Update config.py
• Tidy up (#54)
• 🔥 Remove keep_parent_ref (Add tests #32)
• ⚡️ Update analysis.tarpes. (#57)
• Clean up ruff error. (#58)
• 💥 name change: transform_coords -> transform_meshgrid (#59)
• ✅ Add test for G.*_meshgrid (#60)
• ⚡️ Update build_crosscorrelation (#61)
• Tarpes update (Add pump probe delay time above the figure) (#62)
• 🎸 Remove S.transpose_to_front/back (#65)
• 🔨 Update movie.py to produce another movie (ARPES data with temporal evolution at certain angle/momentum) (#63)
• 🎸 plot_movie and plot_movie_and_evolution output the snapshot (#67)
• 🎸 plot_movie and plot_movie_and_evolution can return anim (#68)
• 💡 Update docs (#70)
• Add link for example tarpes in documents (#69)
• chore: 🤖 Some updates in docstrings and more (#71)
• Refactoring region.py (#72)
• ⚡️ Kinetic -> Final in the code for handling energy notation (#76)
• 💍 Adding test provided by github copilot (#73)
• 💡 Update doc api (#74)
• 💥 Add new method. shift_coords_by (#77)
• 🎨 Remove HighSymmetryPoints variable which can be deuced from HIGH_SYMMETRY_POINTS with get_args (#80)
• 🎉 Bump-up the version number to 4.2.0 (#81)
• Refactoring setup logging, remvoe repair.py, etc. (#82)
• test: 💍 Add new test for wavelength_to_energy
• Update fat_sel (#86)
• 💬 Update CHANGELOG
• Add figure_gallery.ipyb (#85)
• Merge pull request from #88.
• merge pull request (#90)
• ⚡️ Bump up the version (#91)
• Merge pull request (#93)
• 💡 Merge pull request (#92)
• 🎉 Bump up the version (#94)
• 🔧 Update pyproject.toml in order to ignore A005 (#99)
• 🔨Merge pull request (#96) to refactor (in very future) utilities/convert or make it easier to maintain.
• Merge PR (#101)
• Merge pull request (#103) to add test for PhelixEndstation plugin.
• Merge pull request (#104)
• ⚡️ Merge Pull Request (#105)
• ⚡️ Remove wrap_tqdm and add get_tqdm (#106)
• 🚧 Fix ruff preview level but easy to fix errors (#102)
• Fix wrong type (#107)
• 🔥 Remove progress arg (Always show progress bar)
• Remove progress arg. (#108)
• Merge pull request (#109)
• Merge pull request (#110)
• Reducing mypy / pyright error including fix of (#111) (#112)
• Merge PR (#113)
• Merge PR to fix a problem in correct_coords (#117)
• Merge PR (#114)
• Use xelatex (#121)
• Merge PR (#122) to refactor G.shift_by
• Merge PR (#123)
• Merge PR (#124)
• Refactor convert trapezoid (#127)
• Spectrum_degrees_of_freedom to be deplicated (#129)
• Bump up the version to V4.2.4 (#130)
• Merge pull request : 💍 Add test for trapezoid.py (#131)
• Merge PR (Use xarray-lmfit instead of broadcast_model (#128))
• 📝 Stop using guess_fit (#133) and fix the bug in align.py
• Merge PR (#134) Update G.stride.
• 🐛 Remove bug about circularly import
• ⏪ Revert it
• 🐛 Add test for background_hull
• 📝 Merge PR to update README. (#135)
• 💥 Update kz_conversion.py and bump up the version to 5.0.0-pre3 (#132)
• fix: Remove math (#139)
• 🔥 gaussian_filter and boxcar_filter have not been used. (#140)
• Merge PR (#141)
• test: 💍 Add test for calibration (#142)
• 5.0.0 pre4 (#144)
• 🎨 Bump up the version number to 5.0.0-pre5 (#145)
• ✨ Bump up the version 5.0 (#146)
• 💡 Revise the documentation a bit.
• 🎨 Remove OrderedDict dependency
• 🎨 Bump up version.
• ✅ Add tests for .G methods