Skip to content
@cheeseman-lab

Cheeseman Lab

Whitehead Institute

Pinned Loading

  1. brieflow brieflow Public

    Extensible pipeline tool for processing optical pooled screens data.

    Python 17 29

  2. swissisoform swissisoform Public

    Python 2

  3. brieflow-analysis brieflow-analysis Public template

    Template repository for optical pooled screens that use brieflow.

    Jupyter Notebook 6

Repositories

Showing 10 of 35 repositories
  • coTISja Public

    TIS characterization across genes and cell lines

    cheeseman-lab/coTISja’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 18, 2026
  • shasta-analysis Public
    cheeseman-lab/shasta-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 18, 2026
  • brieflow Public

    Extensible pipeline tool for processing optical pooled screens data.

    cheeseman-lab/brieflow’s past year of commit activity
    Python 17 MIT 29 3 7 Updated Feb 17, 2026
  • brieflow-analysis Public template

    Template repository for optical pooled screens that use brieflow.

    cheeseman-lab/brieflow-analysis’s past year of commit activity
    Jupyter Notebook 0 6 0 2 Updated Feb 16, 2026
  • aconcagua-analysis-new Public
    cheeseman-lab/aconcagua-analysis-new’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 16, 2026
  • mozzarellm Public
    cheeseman-lab/mozzarellm’s past year of commit activity
    Python 19 1 0 0 Updated Feb 13, 2026
  • xueshan-analysis Public
    cheeseman-lab/xueshan-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 11, 2026
  • swissisoform Public
    cheeseman-lab/swissisoform’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 6, 2026
  • process-ribo-prof Public
    cheeseman-lab/process-ribo-prof’s past year of commit activity
    0 0 0 0 Updated Jan 30, 2026
  • atis-constraint Public
    cheeseman-lab/atis-constraint’s past year of commit activity
    Python 0 0 0 0 Updated Jan 22, 2026
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…