Accompanying code

This repository contains accompanying code for the paper "Dissecting depression symptoms: multi-omics clustering uncovers immune-related subgroups and cell-type specific dysregulation".

The repository has the following structure:

• figures_and_tables
  • 01_figures_and_table_main.Rmd contains the code to generate the figures and tables for the main manuscript
  • 01_b_single_cell_figure_6.ipynb contains the code to generate the single cell related parts of figure 6
  • 02_figures_and_tables_supplement.Rmd contains the code to generate the figures and tables for the supplement
  • 03_statistical_tets.Rmd contains the statistical tests for both the main manuscript and the supplement
  • plotting_functions.R contains helper plot functions
  • reporting_functions.R contains helper functions to generate tables
  • test_functions.R contains helper functions for statistical tests