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Fix IO errors with corrupted files. #305

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Fix IO errors with corrupted files. #305

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d1bbf9a
Fix IO errors with corrupted files.
jolaem Mar 22, 2024
1817e6e
Correct IOError to ValueError.
jolaem Mar 22, 2024
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11 changes: 9 additions & 2 deletions avae/data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -349,8 +349,15 @@ def read(self, filename):
return np.load(os.path.join(self.root_dir, filename))

elif self.datatype == "mrc":
with mrcfile.open(os.path.join(self.root_dir, filename)) as f:
return np.array(f.data)
try:
with mrcfile.open(os.path.join(self.root_dir, filename)) as f:
return np.array(f.data)
except ValueError:
raise ValueError(
"File {} is corrupted.".format(
os.path.join(self.root_dir, filename)
)
)

def voxel_transformation(self, x):

Expand Down