Skip to content

Flask/database: research alternatives to how rsids are stored and/or methods to speed up query #754

@delvinso

Description

@delvinso

Rsid based queries can currently take > 10 minutes to run depending on the number of variants associated with the rsid. This is because the rsid is currently stored as a comma delimited string in the variant table and correspondingly searched against using the mysql like operator. A possible option is to store rsid field and its relationship to chr:position as a separate 1:N table, which would require a migration and potentially a one time click command to decompose the table.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions