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@ccmbioinfo

Centre for Computational Medicine at SickKids

The Centre for Computational Medicine (CCM) is a Core Facility within the SickKids Research Institute. Email: ccm dot contact at sickkids dot ca

The Centre for Computational Medicine (CCM)

The Centre for Computational Medicine (CCM) is a Core Facility within The Hospital for Sick Children (SickKids) Research Institute. Our mission is to provide the scientists and clinicians at SickKids with computational expertise, including high performance computing resources, bioinformatics analysis consulting, and software development. The CCM also acts as a collaboration nexus, working with both biological/medical and computational scientists at SickKids and the University of Toronto to identify appropriate collaborators.

Read more about our projects and our team at ccm.sickkids.ca!

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  1. crg2 crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    Python 16 5

  2. MetaFusion MetaFusion Public

    Python 8 2

  3. stager stager Public

    Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.

    TypeScript 7

  4. osmp osmp Public

    One-Sided Matching Portal

    TypeScript 6 1

  5. slurm-rest-py slurm-rest-py Public

    OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.

    Python 2 1

  6. status status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    Markdown

Repositories

Showing 10 of 38 repositories
  • status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status’s past year of commit activity
    Markdown 0 MIT 0 1 0 Updated Jan 6, 2026
  • status-genomics4rd Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status-genomics4rd’s past year of commit activity
    Markdown 0 MIT 0 0 0 Updated Jan 6, 2026
  • seqr-cfi Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CFI on G4RD

    ccmbioinfo/seqr-cfi’s past year of commit activity
    Python 0 AGPL-3.0 93 2 3 Updated Jan 5, 2026
  • ccm_benchmate_docs Public

    Documentation for ccm_benchmate package

    ccmbioinfo/ccm_benchmate_docs’s past year of commit activity
    Ruby 0 MIT 1 1 4 Updated Jan 5, 2026
  • crg2-pacbio Public
    ccmbioinfo/crg2-pacbio’s past year of commit activity
    Python 0 2 8 4 Updated Jan 5, 2026
  • ccm_benchmate Public

    A knowledge aggregator for computational biology

    ccmbioinfo/ccm_benchmate’s past year of commit activity
    Python 5 3 12 (2 issues need help) 3 Updated Jan 2, 2026
  • osmp-cmh-token-proxy Public

    A NodeJS proxy for swapping Authorization headers in OSMP requests to CMH's PhenoTips instance.

    ccmbioinfo/osmp-cmh-token-proxy’s past year of commit activity
    TypeScript 2 0 1 0 Updated Dec 17, 2025
  • ccmbioinfo/translational-genomics’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 16, 2025
  • cre Public

    excel report generation using data from bcbio variant2 germline pipeline

    ccmbioinfo/cre’s past year of commit activity
    Shell 6 MIT 0 0 6 Updated Dec 1, 2025
  • ccm_vignettes Public

    Some vignettes for newcomes to bioniformatics

    ccmbioinfo/ccm_vignettes’s past year of commit activity
    Jupyter Notebook 0 1 0 1 Updated Dec 1, 2025