#Webgenekfca

This is a Beta web based tool which helps the researcher to group similar genes based on their expression profiles for different experiments. The genes are grouped based on the concepts obtained from a K-Formal Concept Analysis.

#Installation

To install you only need docker

docker run --name webgenekfca -d -p 8080:8080 calabozo/webgenekfca

The web will be available at: http://localhost:8080/webgenekfca

To upload data you must login. The default web user/password is admin/admin1.

The file format can be:

• Several Affymetrix CEL files.
• A gene expression file in the format given by the Affymetrix apt-probeset-summarize. Several count read files obttained with htseq-count or a equivalent program.
• A gene expression file in the format given by the Affymetrix apt-probeset-summarize. Several count read files obttained with htseq-count or a equivalent program.

You can start by downloading the CEL files from: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9311

For development read the document README.txt

#Basic monitoring

To stop the container execute:

docker stop webgenekfca

To start again the container execute:

docker start webgenekfca

To see the logs:

docker exec -t webgenekfca tail -F /var/log/tomcat7/webgenekfca.log

#Advanced uses

If you want to deploy a new .war you just have to mount the remote dir /var/lib/tomcat7/webapps into the folder where you would leave the .war file:

docker run --name webgenekfca -v <host_directory>:/var/lib/tomcat7/webapps -d -p 8080:8080 calabozo/webgenekfca

If you want to enter into the shell of the container execute:

docker exec -t -i webgenekfca /bin/bash