McGill COVID19 Projects Documentation

The current build of the documentation for all COVID-related projects can be found here

Viral Sequencing Pipeline Information:

• Illumina:
  • Pipeline repository: source code for version 1.0 can be found here.
  • Documentation: documentation page found here.
• Nanopore:
  • Pipeline repository: we use a clone of ARTIC Network pipeline v1.1.0-rc1.
  • Documentation: documentation page found here.