Application for genomic data analysis
Last updated: July 1st 2012
SUMMARY
* A/ HARDWARE REQUIREMENTS
* B/ SOFTWARE REQUIREMENTS
* C/ INSTALLING GeneQuery Office
* D/ QUICK START
* E/ CONTACT
A/ HARDWARE REQUIREMENTS
GeneQuery Office was designed to work on any standard Windows environment. To use GeneQuery for tutorial/teaching purposes, a minimum of 2 GB RAM is required. To get started on real data sets a minimum of 8/16 GB of RAM is recommened.
B/ SOFTWARE REQUIREMENTS
*B.1. Python 2.5: http://www.python.org/ftp/python/2.5.4/python-2.5.4.msi
*B.2. R-2.7.0: http://cran.es.r-project.org/bin/windows/base/old/2.7.0/R-2.7.0-win32.exe
*B.3. Rpy: http://sourceforge.net/projects/rpy/files/rpy/1.0.3/rpy-1.0.3-R-2.7.0-win32-py2.5.exe/download
*B.4. Numpy: http://sourceforge.net/projects/numpy/files/NumPy/1.6.0/numpy-1.6.0-win32-superpack-python2.5.exe/download
*B.5. PyWin32: http://sourceforge.net/projects/pywin32/files/pywin32/Build216/pywin32-216.win32-py2.5.exe/download
C/ INSTALLING GeneQuery
Install all software requirements and compy the srs.R and AS_Basic.py files within the folder C:\PG (If PG folder does not exist, create it)
GeneQuery Office Advanced version (for all types of Microarrays, RealTime qPCR and NGS) can be ordered at btcpar@gmail.com. Free easy-to-use installer will be provided.
D/ QUICK START
Within the menu "Help >> Getting Started" you will find detailed information for a first data analysis. Data used in the user case are available at Gene Expression Omnibus repositoy (http://www.ncbi.nlm.nih.gov/geo/)
E/ CONTACT
For more information please visit http://about.me/joaquin.panadero