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Pull requests: broadinstitute/gnomad_methods

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Pull requests list

Update gnomad_gks methods for VRS 2.0.1 and CohortAlleleFrequencyStudyResult 1.0.1
#818 opened Feb 4, 2026 by theferrit32 Loading…
@ch-kr
14
Add module to detect missingness in annotations and optionally remove them annotation Changelog: new feature
#815 opened Jan 23, 2026 by mike-w-wilson Loading…
@klaricch @mike-w-wilson
16
Bump urllib3 from 2.5.0 to 2.6.0 in /docs in the pip group across 1 directory dependencies Pull requests that update a dependency file python Pull requests that update Python code
#809 opened Dec 6, 2025 by dependabot bot Loading…
Add function for exploding intervals to loci Changelog: new feature
#789 opened Jul 3, 2025 by Ruchit10 Loading…
29
Implement Kyle's code for p_de_novo
#771 opened Mar 18, 2025 by KoalaQin • Draft
@KoalaQin
Add filter_meta_array and change filter_arrays_by_meta to support more complex items_to_filter parameters by using filter_meta_array Changelog: new feature
#725 opened Aug 19, 2024 by jkgoodrich Loading…
@klaricch @jkgoodrich
32
Deprecate get_most_severe_consequence_for_summary in favor of more flexible get_most_severe_csq_from_multiple_csq_lists Changelog: new feature
#714 opened Jun 25, 2024 by jkgoodrich Loading…
@klaricch @jkgoodrich
27
Initial upload of VQSR workflow Variant QC
#470 opened Jul 22, 2022 by LindoNkambule • Draft
@jkgoodrich
13
Fix ref_allele_mismatch in liftover_expr for indel variants
#273 opened Nov 18, 2020 by mkanai • Draft
3
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