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Lacking h5 files

Status: Open.

#436 In broadinstitute/CellBender;

· feather-W opened on Dec 29, 2025

Support for GEMX 10x Droplet Data

Status: Open.

#435 In broadinstitute/CellBender;

· xiaodeng6410 opened on Dec 23, 2025

add <code>--force-use-checkpoint</code> to WDL

enhancementNew feature or improvementNew feature or improvement

Status: Open.

#434 In broadinstitute/CellBender;

· sjfleming opened on Dec 8, 2025

Re-use of a checkpoint

bugSomething isn't workingSomething isn't working

Status: Open.

#433 In broadinstitute/CellBender;

· sjfleming opened on Dec 8, 2025

GPU Compatibility Issue (NVIDIA H200)

Status: Open.

#432 In broadinstitute/CellBender;

· taeyunkim03 opened on Dec 5, 2025

cell type specific enrichment of background in cellbender results

Status: Open.

#431 In broadinstitute/CellBender;

· LinearParadox opened on Nov 11, 2025

Loss of relevant cell cluster with low-RNA content after cell bender

Status: Open.

#428 In broadinstitute/CellBender;

· NaCo-Pt opened on Sep 30, 2025

Learning curve Train/test

Status: Open.

#427 In broadinstitute/CellBender;

· Merguerrero opened on Sep 25, 2025

Extraneous dependencies on Jupyter makes installation slow

Status: Open.

#426 In broadinstitute/CellBender;

· SuperSonicHub1 opened on Sep 1, 2025

Help interpreting CellBender output and choice of parameters

Status: Open.

#422 In broadinstitute/CellBender;

· AClab-sgarcia opened on Jul 16, 2025

Test and Train models diverging

Status: Open.

#421 In broadinstitute/CellBender;

· RICE-G opened on Jun 30, 2025

Warnings, parameters tuning and precaution regarding overcorrection

Status: Open.

#419 In broadinstitute/CellBender;

· JaneChik opened on Jun 27, 2025