feature/DiagnosticReport-Procedure

[bwalsh]

This PR:

• adds DiagnosticReport, Procedure and Practitioner

Related:

• feature/DiagnosticReport-Procedure iceberg-schema-tools#35
• feature/DiagnosticReport-Procedure #13

[matthewpeterkort]

Has the new schema been tested with aced data populated in gen3?

[bwalsh]

Testing is not complete yet. I have loaded the schema into gen 3 locally. It has not been loaded into development or CBDS yet. The scheme is available in the public bucket at aved-test.json

[bwalsh]

@matthewpeterkort AFAIK, the schema is loaded into gen3 on all platforms.

[matthewpeterkort]

@matthewpeterkort AFAIK, the schema is loaded into gen3 on all platforms.

Don't see any of these new vertex types reflected in the data dictionary pages of prod,staging or development. Is that on purpose?

[matthewpeterkort]

Subject_patient edge does not exist for task on this branch. From testing Nasim's preliminary gdc translations this will be needed for BMEG edge generation.

Also, not sure if Diagnostic Report ended up getting implemented

[bwalsh]

Subject_patient edge does not exist for task on this branch. From testing Nasim's preliminary gdc translations this will be needed for BMEG edge generation.

• https://github.com/bmeg/iceberg/blob/feature/DiagnosticReport-Procedure/schemas/simplified/research_subject.yaml#L9-L14

• https://github.com/bmeg/iceberg/blob/feature/DiagnosticReport-Procedure/schemas/graph/ResearchSubject.yaml#L22-L36

Also, not sure if Diagnostic Report ended up getting implemented

• https://github.com/bmeg/iceberg/blob/feature/DiagnosticReport-Procedure/schemas/simplified/diagnostic_report.yaml
• https://github.com/bmeg/iceberg/blob/feature/DiagnosticReport-Procedure/schemas/graph/DiagnosticReport.yaml

@matthewpeterkort ^^

[matthewpeterkort]

See #14