Add small fixes to bootstrap

[patrickelectric]

Summary by Sourcery

Tighten bootstrap configuration handling and developer tooling settings.

Enhancements:

• Add optional typing for the low-level Docker API client in the bootstrapper constructor.
• Log a warning when the Docker config backup file is missing instead of silently ignoring it.
• Correct a bootstrap comment typo and align import and isort configuration for the bootstrap package as a first-party module.

[sourcery-ai]

Reviewer's guide (collapsed on small PRs)

Reviewer's Guide

Minor bootstrap cleanups: improve type hints, logging, and comments, and adjust tooling configuration for import ordering and project structure.

Updated class diagram for Bootstrapper in bootstrap module

classDiagram
    class Bootstrapper {
        <<class>>
        +bool version_chooser_is_online
        +float core_last_response_time
        +DockerClient client
        +APIClient low_level_api
        +__init__(DockerClient client, Optional_APIClient low_level_api)
        +run()
    }

    class DockerClient {
    }

    class APIClient {
    }

    class Optional_APIClient {
    }

    DockerClient <.. Bootstrapper : uses
    APIClient <.. Bootstrapper : optional uses
    Optional_APIClient <|-- APIClient

Loading

File-Level Changes

Change	Details	Files
Make Docker low-level API parameter explicitly optional in Bootstrapper constructor.	Change constructor type annotation from docker.APIClient to Optional[docker.APIClient]. Keep runtime behavior the same by preserving default None value.	bootstrap/bootstrap/bootstrap.py
Improve logging and comments around Docker config backup and core restart logic.	Replace silent FileNotFoundError handling with a warning log when the Docker config file backup is missing. Fix typo in comment describing version chooser failure and core restart behavior.	bootstrap/bootstrap/bootstrap.py
Align tooling and imports with project structure.	Add bootstrap to isort known_first_party configuration to enforce correct import grouping. Keep Bootstrapper import in main module (likely reformatting/no-op change).	core/pyproject.toml bootstrap/main.py

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[sourcery-ai]

Hey - I've left some high level feedback:

• In overwrite_config_file_with_defaults, the warning message says the backup is being created when FileNotFoundError occurs, but the code skips backup creation and only copies the default config; consider adjusting the message or behavior so the log matches what actually happens.

Prompt for AI Agents

Please address the comments from this code review:

## Overall Comments
- In `overwrite_config_file_with_defaults`, the warning message says the backup is being created when `FileNotFoundError` occurs, but the code skips backup creation and only copies the default config; consider adjusting the message or behavior so the log matches what actually happens.

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