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add plotting function dependencies
1 parent aa30c67 commit 088103c

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Lines changed: 10 additions & 5 deletions

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src/netmap/downstream/plotting.py

Lines changed: 10 additions & 5 deletions
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@@ -2,6 +2,16 @@
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import pandas as pd
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from collections import Counter
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import numpy as np
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import matplotlib.pyplot as plt
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import networkx as nx
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import seaborn as sns
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from mpl_toolkits.axes_grid1.inset_locator import inset_axes
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def rank_regulon_groups_dotplot(grn_adata_filtered, adata_regl, original_cluster_column = 'leiden', new_cluster_column = 'leiden_remap', n_genes=10, key="wilcoxon", cmap='bwr', figsize=(25, 2), values_to_plot="scores", return_fig = True):
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"""_summary_
@@ -60,11 +70,6 @@ def rank_regulon_groups_dotplot(grn_adata_filtered, adata_regl, original_cluster
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import pandas as pd
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import networkx as nx
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import matplotlib.pyplot as plt
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import seaborn as sns
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from mpl_toolkits.axes_grid1.inset_locator import inset_axes
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def get_grn_from_regulon(regulon_df, full_name, top_n=20):
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"""

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