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Automatically create folder with all necessary information to run app.

Status: Open.

#8 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on Mar 15, 2024

migrate Seurat version to 5

Status: Open.

#7 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on Mar 15, 2024

Add an automatic reference generator for the tools

Status: Open.

#6 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on Aug 14, 2023

Make sure to not produce unwanted side effects when setting idents.

Status: Open.

#5 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on Jun 30, 2023

Decrease memroy footprint of Shiny app

Status: Open.

#4 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on Jun 30, 2023

Allow combination of multiple different GRN inferrence tools, to form a Meta-GRN

Status: Open.

#3 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on May 23, 2023

Add differential expression score on nodes (fold change, p-value) where applicable

Status: Open.

#2 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on May 23, 2023

Use metacell2 package to create Metacells instead of using naive approach.

Status: Open.

#1 In bionetslab/grn-nextflow;

· AnneHartebrodt opened on May 23, 2023