PyTaxonKit 0.10.1

Fixed

• Handling of taxon names containing multiple sets of square brackets (#47)
• Dependency pin affecting Python 3.13 compatibility (#48)

PyTaxonKit 0.10

Changed

• Swapped taxonkit reformat for taxonkit reformat2 to restore sane default behaviors after NBCI shuffled ranks near the root of the taxonomy database (#43, #44)

PyTaxonKit 0.9.1

Changed

• Updated version of bundled versioneer package for Python 3.12 compatibility, improved environment hygiene (#36)
• Updated test suite to accommodate bugfix affecting taxonkit filter behavior with discard_norank argument (#37)

PyTaxonKit 0.9

Added

• Support for new -K/--keep-invalid flag in taxonkit lca command (#35); see https://github.com/shenwei356/taxonkit/releases/tag/v0.16.0

Fixed

• Updated test suite to accommodate taxonomy DB changes (#28, #29, #30)

PyTaxonKit 0.8

Changed

• Updated doctest for pytaxonkit.list to include taxa that are updated in the NCBI taxonomy DB less frequently (#13, #14, #21, #24)
• Other occasional updates to compensate for changes in the NCBI taxonomy DB (#15, #16, #17, #23, #26)
• Updated pytaxonkit.list_ranks() to match updated taxonkit filter --list-order behavior (#20)
• Now using Black instead of pycodestyle to check and autoformat Python code (#27)

Fixed

• Bug with how certain functions handle empty inputs (#19)
• Bug causing pytaxonkit.lineage to fail when only a single taxid was provided as input (#22)
• Bug causing pytaxonkit.lca to fail when all input taxids are deleted or "unfound" (#22)
• Bug causing pytaxonkit.name to fail on empty inputs (#26)

PyTaxonKit 0.7.2

This release adds support for new features introduced in TaxonKit 0.7, as well as bug fixes and flags added in 0.7.1 and 0.7.2.

Added

• New filter() function supporting new taxonkit filter command (#4, #8)
• New lca() function supporting new taxonkit lca command (#5)
• Support for new prefix related flags (#6)
• Use new --show-lineage-ranks to create new FullLineageRanks column in lineage() output (#8)

PyTaxonKit 0.6.1

Added

• New name() function taking advantage of new --show-name and --no-lineage flags in taxonkit lineage (#2)

PyTaxonKit 0.6

Initial release!