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@standage standage commented Dec 12, 2025

This PR adds support for symbolically linking instead of copying Fastq files to the destination path. Closes #7.

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Looks good to me! Changes are simple and concise.

desc = f"[bold red]{fastq.sample:>16s} R{fastq.read}"
progress.update(task, description=desc)
was_copied = fastq.check_and_copy(destination)
was_copied = fastq.check_and_copy(destination, link=self.link)
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Good catch!

@RyanBerger98 RyanBerger98 merged commit 501c5b4 into main Dec 12, 2025
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Feature request: ability to symbolically link rather than copy

3 participants