Bio2BEL InterPro

Converts the InterPro protein families, domains, and other classes to ontological relations in BEL.

Installation

bio2bel_interpro can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_interpro

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/interpro.git@master

Setup

InterPro can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_interpro
>>> interpro_manager = bio2bel_interpro.Manager()
>>> interpro_manager.populate()

Command Line Utility

bio2bel_interpro populate

Programmatic Interface

To enrich the proteins in a BEL Graph with their InterPro entries (families, domains, sites, etc.) , use:

>>> from bio2bel_interpro import enrich_proteins
>>> graph = ... # get a BEL graph
>>> enrich_proteins(graph)