Add Command line mode + Refactoring of code#1
Open
Caiofcas wants to merge 10 commits intobio-coding:masterfrom
Open
Add Command line mode + Refactoring of code#1Caiofcas wants to merge 10 commits intobio-coding:masterfrom
Caiofcas wants to merge 10 commits intobio-coding:masterfrom
Conversation
added 10 commits
October 14, 2020 17:49
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Thank you for making this code available!
I had to make some changes to use in my undergrad research project, so i figured I would share them back.
Most of it is refactoring the separate variables for each amino acid feature into one dictionary for each feature, but i also added a way to use it from the command line with a .fasta file that gives the output in a .tsv format.
Also added a requirements.txt because it took me a while to find the exact version of scikit-learn being used.