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53 changes: 53 additions & 0 deletions .github/workflows/test_latest.yml
Original file line number Diff line number Diff line change
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---
name: test latest image

on:
push:
branches: ['*']
schedule:
- cron: 0 0 1 * *
workflow_dispatch:

concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true

jobs:

test_dataset_without_session:

runs-on: ubuntu-latest

steps:
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get install -y tree

- name: pull docker image
run: docker pull bids/baracus

- name: get data
run: |
wget https://raw.githubusercontent.com/bids-apps/maintenance-tools/main/utils/get_data_from_osf.sh
bash get_data_from_osf.sh ds114_test1
bash get_data_from_osf.sh ds114_test1_freesurfer

- name: help
run: |
docker run -t --rm bids/baracus --help
docker run -t --rm bids/baracus --version

- name: run
run: |
docker run --rm -t \
-v ${HOME}/data/ds114_test1:/data/in \
-v ${HOME}/data/ds114_test1_freesurfer:/data/fs \
-v ${HOME}/data/ds114_test1:/data/out \
bids/baracus \
/data/in /data/out participant \
--freesurfer_dir /data/fs \
--license_key="~/test.key"

- name: check output
run: tree ${HOME}/data/ds114_test1