Collection of workflows, scripts, pipelines etc that process and analyze recordings of flies.
For more information on the structure of this repo, see this template repo.
The script files scripts/*.py are workflows for the individual steps in the analysis pipeline.
| script file | use case |
|---|---|
side_preference.py |
analyze time and stopping behavior in left and right side of chamber |
These old scripts need to become part of the new code structure.
scripts/still_frames/
# create conda environment with necessary dependencies
conda env create -n free_walking_analysis -f environment.yml
# get source code
git clone https://github.com/bidaye-lab/free_walking_analysis
# install code as local local python module
cd free_walking_analysis
pip install -e .