BimodXpress is a Snakemake-powered pipeline for comparative transcriptomics to identify genes associated with bimodal lifestyle adaptation (aerial vs. submerged) across species.
- Cross-species TPM integration and normalization
- Orthogroup-based expression matrix construction
- Identification of bimodal-specific gene candidates
- Modular design for extension with functional annotations
- Edit
config/config.yamlwith your file paths and species categories. - Run with:
snakemake --cores 4- Outputs will be saved to the
results/folder.