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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 70 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 59 9

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 2 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Seamless CLI access to orcestra datasets

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    3

Repositories

Showing 10 of 244 repositories
  • AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    bhklab/AnnotationGx’s past year of commit activity
    R 2 MIT 1 11 1 Updated Apr 20, 2026
  • PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    bhklab/PharmacoGx’s past year of commit activity
    R 70 GPL-3.0 26 74 4 Updated Apr 17, 2026
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 59 MIT 9 30 (1 issue needs help) 6 Updated Apr 17, 2026
  • bhklab-nninteractive Public

    bhklab-nnInteractive is a project which tests the nnInteractive medical image segmentation model using RECIST and RERECIST input prompts and evaluates its performance.

    bhklab/bhklab-nninteractive’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 16, 2026
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii’s past year of commit activity
    Jupyter Notebook 5 MIT 0 29 (3 issues need help) 3 Updated Apr 15, 2026
  • novartis_pdxe_xevaset Public
    bhklab/novartis_pdxe_xevaset’s past year of commit activity
    HTML 0 0 1 0 Updated Apr 15, 2026
  • retiring-the-ruler Public

    Simulation code accompanying the Retiring the Ruler: Toward a Volumetric, Multi-Lesion, Longitudinal Lens on Tumor Response paper.

    bhklab/retiring-the-ruler’s past year of commit activity
    Python 0 0 0 2 Updated Apr 15, 2026
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    bhklab/ORCESTRA’s past year of commit activity
    JavaScript 5 Apache-2.0 2 29 8 Updated Apr 14, 2026
  • bhklab-website Public

    BHK Lab website

    bhklab/bhklab-website’s past year of commit activity
    JavaScript 0 0 6 0 Updated Apr 14, 2026
  • readii_2_roqc Public
    bhklab/readii_2_roqc’s past year of commit activity
    Jupyter Notebook 2 1 4 0 Updated Apr 14, 2026
View all repositories

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