pyMSA is an open source software tool aimed at providing a number of scores for multiple sequence alignment (MSA) problems. A tutorial about pyMSA is available in the resources folder of the proyect.
Score functions implemented:
- Sum of pairs,
- Star,
- Minimum entropy,
- Percentage of non-gaps,
- Percentage of totally conserved columns and
- STRIKE (Single sTRucture Induced Evaluation).
To download PyMSA just clone the Git repository hosted in GitHub:
$ git clone https://github.com/benhid/pyMSA.git
$ python setup.py installAlternatively, you can install it with pip:
$ pip install pyMSAAn example of running all the included scores is located in the example folder.
This project is licensed under the terms of the MIT - see the LICENSE file for details.