index.md

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title	Spatial Biology at Scale | Seattle Sept 17, 2024
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excerpt	The annual Spatial Biology at Scale meeting will be held at the <u><a href="#" data-bs-toggle="modal" data-bs-target="#Location" >Foege South</a></u> building at the University of Washington.
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tags	Spatial-Bio-Archive
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jumbotron	registration_active registration_link content actions true https://docs.google.com/forms/d/182MwzoIk_RCJTZRCTxq8SW4OFVjS3FI1iZYHOKjjPs4 Registration Deadline: 09.12.2024<br><u><a href="https://docs.google.com/forms/d/17jxd3_gJlVtQc7jSV-Ru0RUm6spuXVPDlcpfmqGksw8" target="_blank" rel="noreferrer noopener">Abstract Submission</a></u> Deadline: 09.12.2024 text Speakers text Program
carousel	active images https://api.coarchitects.com/wp-content/uploads/2022/08/COJ148_N2145_print.jpg src https://facilities.uw.edu/blog/files/media/drumheller-bagley-hero.jpg src https://bpb-us-e1.wpmucdn.com/sites.uw.edu/dist/8/10119/files/2020/12/Foege_Hall-1241.jpg
data	sections title subtitle excerpt Location <div class="ratio ratio-4x3"><iframe src="https://www.google.com/maps/embed?pb=!1m18!1m12!1m3!1d671.9147319563219!2d-122.31313192402544!3d47.65219439318942!2m3!1f0!2f0!3f0!3m2!1i1024!2i768!4f13.1!3m3!1m2!1s0x549014ede4bdea51%3A0x5d0ff1cf2aed917f!2sWilliam%20H.%20Foege%20Hall%2C%203720%2015th%20Ave%20NE%2C%20Seattle%2C%20WA%2098105!5e0!3m2!1sen!2sus!4v1690266880096!5m2!1sen!2sus" width="800" height="600" style="border:0;" allowfullscreen="" loading="lazy" referrerpolicy="no-referrer-when-downgrade"></iframe></div> title subtitle children Speakers card title src url content Philip Abitua, Ph.D. https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://abitua.org Assistant Professor of Genome Sciences, UW card title src url content Adam Glaser, Ph.D. https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/adam-glaser/ Senior Scientist, Allen Institute for Neural Dynamics card title src url content Nobuhiko Hamazaki, Ph.D. https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://hamazaki-lab.com Assistant Professor of Obstetrics & Gynecology, UW card title src url content A. Murat Maga, Ph.D. https://www.seattlechildrens.org/icon.svg https://www.seattlechildrens.org/directory/a-murat-maga/ Assistant Professor of Pediatrics, UW & Seattle Children's Research Institute card title src url content Kevin Takasaki, Ph.D. https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/kevin-takasaki/ Scientist III, Allen Institute for Brain Science card title src url content Stephanie Seeman, Ph.D. https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/stephanie-seeman/ Scientist III, Allen Institute for Brain Science card title src url content Sharmishtaa Seshamani, Ph.D. https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/sharmishtaa-seshamani/ Computer Vision Manager, Allen Institute for Brain Science card title src url content Sanjay Srivatsan, Ph.D. https://www.fredhutch.org/etc.clientlibs/common/clientlibs/resources/svg/logo-color-no-dots.svg https://www.srivatsan-lab.com Assistant Professor of Basic Sciences, Fred Hutch card title src url content Stefan Stamenkovic, Ph.D. https://www.seattlechildrens.org/icon.svg https://theshihlab.com/team/stefan-stamenkovic-phd/ Postdoc, <a href="https://theshihlab.com/" target="_blank" rel="noreferrer noopener">Shih Lab</a>, Seattle Children's Research Institute card title src url content Matheus Viana, Ph.D. https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/matheus-viana/ Senior Scientist, Allen Institute for Cell Science card title src url content Sheng Wang, Ph.D. https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://homes.cs.washington.edu/~swang/ Assistant Professor of Computer Science, UW card title src url content Min Yang, Ph.D. https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://yang-lab-uw.com/ Assistant Professor of Obstetrics & Gynecology, UW title subtitle program Program title time location Welcome from the organizers, announcements 09:00-09:10am <i>Foege Auditorium</i> title time location <b><i>Talk Session 1. Chair: <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Adam Glaser</a></i></b> <b>09:10-10:45am</b> <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Sheng Wang</a>, <i>Generative AI for whole-slide pathology imaging</i>. 09:10-09:30am <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Stefan Stamenkovic</a>, <i>Optical interrogation of changes in cerebrovascular structure and function in normal aging and Alzheimer’s disease</i>. 09:30-09:50am <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Philip Abitua</a>, <i>Illuminating Annual Killifish Development with Light Sheet Microscopy</i>. 09:50-10:10am <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Murat Maga</a>, <i>3D Slicer, SlicerMorph, and their friends: An open ecosystem for 3D image analytics and phenotype discovery</i>. 10:10-10:30am <i>Foege Auditorium</i> title time location <b>Leigh Harris</b>, Allen Institute for Cell Science, <i>Talk selected from abstracts</i>. 10:30-10:45am <i>Foege Auditorium</i> title time location Coffee Break 10:45-11:15am <i>Vista Café</i> title time location <b><i>Talk Session 2. Chair: <a href="https://www.gs.washington.edu/faculty/beliveau.htm" target="_blank" rel="noreferrer noopener">Brian Beliveau</a></i></b> <b>11:15-12:35pm</b> <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Min Yang</a>, <i>Error Prone Human Embryogenesis: The Cell Fate and Tolerance of Chromosomal Abnormality</i>. 11:15-11:35am <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Nobuhiko Hamazaki</a>, <i>Reconstitution of mammalian life cycle in vitro</i>. 11:35-11:55am <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Adam Glaser</a>, <i>Developing new microscope technologies: from concept, to prototype, to "product"</i>. 11:55-12:15pm <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Stephanie Seeman</a>, <i>Building a Spatial Atlas of Human and Non-Human Primate Brain</i>. 12:15-12:35pm <i>Foege Auditorium</i> title time location Lunch 12:35-01:50pm <i>Vista Café</i> title time location <b><i>Talk Session 3. Chair: <a href="https://alleninstitute.org/person/brian-long/" target="_blank" rel="noreferrer noopener">Brian Long</a></i></b> <b>01:50-03:25pm</b> <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Kevin Takasaki</a>, <i>Lightsheet microscopy for connectomics across spatial scales</i>. 01:50-02:10pm <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Mattheus Viana</a>, <i>Quantifying intracellular organization in human iPS cells using appropriate representations</i>. 02:10-02:30pm <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Sharmishtaa Seshamani</a>, <i>Looking for the Neuron in the Image Stack</i>. 02:30-02:50pm <i>Foege Auditorium</i> title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Sanjay Srivatsan</a>, <i>Optics-free reconstruction of 2D images via DNA</i>. 02:50-03:10pm <i>Foege Auditorium</i> title time location <b>Sriram Pendyala</b>, University of Washington, <i>Talk selected from abstracts</i>. 03:10-03:25pm <i>Foege Auditorium</i> title time location Closing remarks from the organizers 03:25-03:30pm <i>Foege Auditorium</i> title time location Poster session with refreshments 03:30-05:30pm <i>Vista Café</i>

Overview

Featured Topics

- Volumetric imaging - Optical probes - Spatial transcriptomics - 3D pathology - Instrumentation - Quantitative image analysis - Organoids - Computer Vision


Speakers

• Philip Abitua, Ph.D. (Assistant Professor of Genome Sciences, UW)
• Adam Glaser, Ph.D. (Senior Scientist, Allen Institute for Neural Dynamics)
• Nobuhiko Hamazaki, Ph.D. (Assistant Professor of Obstetrics & Gynecology, UW)
• A. Murat Maga, Ph.D. (Assistant Professor of Pediatrics, UW & Seattle Children's Research Institute)
• Kevin Takasaki, Ph.D. (Scientist III, Allen Institute for Brain Science)
• Stephanie Seeman, Ph.D. (Scientist III, Allen Institute for Brain Science)
• Sharmishtaa Seshamani, Ph.D. (Computer Vision Manager, Allen Institute for Brain Science)
• Sanjay Srivatsan, Ph.D. (Assistant Professor of Basic Sciences, Fred Hutch)
• Stefan Stamenkovic, Ph.D. (Postdoc, Shih Lab, Seattle Children's Research Institute)
• Matheus Viana, Ph.D. (Senior Scientist, Allen Institute for Cell Science)
• Sheng Wang, Ph.D. (Assistant Professor of Computer Science, UW)
• Min Yang, Ph.D. (Assistant Professor of Obstetrics & Gynecology, UW)

Organizing Committee

• Brian J. Beliveau (UW Genome Sciences)
• Adam Glaser (Allen Institute for Neural Dynamics)
• Brian Long (Allen Institute for Brain Science)

Sponsors