Gen 575: Fundamentals of Biomedical Instrumentation

A scalable machine learning pipeline for probe specificity prediction.

Python package for genome-scale DNA/RNA FISH oligo probe set design

An image analysis pipeline for performing image alignment, nuclear instance segmentation, and morphological feature extraction from terabyte-scale lightsheet fluorescence microscopy images.

(temporary?) website for the W.M. Keck Imaging Center at UW Seattle

Jekyll Template for Spatial Biology Website

A collection of downloadable resources accompanying the PaintSHOP application.

Tigerfish

Shiny App for interactive oligo probe design.

Python scripts to segment/quantify smFISH spots and local proteome labeling from SABER and peroxidase-SABER microscopy images.